Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120726.seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     32   0.51 
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         31   1.2  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    30   2.0  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    29   4.7  
SB_33565| Best HMM Match : SET (HMM E-Value=3.99931e-42)               28   8.3  
SB_9028| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/79 (24%), Positives = 39/79 (49%)
 Frame = +3

Query: 225  LVEKIAIESFITKKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEE 404
            ++EK   ++F  KK + +  +D  +  +E+  +   K +K+N+ ++ K       E  E+
Sbjct: 1867 VIEKSLQKTFHPKKKENEEEDDKKEKKEENEEEEKKKKKKENEEEDDKKNNKEENEEDEK 1926

Query: 405  RRLRKTKINHEIKASKKAT 461
            +  +K + N E    KK T
Sbjct: 1927 KEKKKKEENEEEDDKKKKT 1945


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 261 KKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEERRLRKTKINHEI 440
           K+ + +RRE+  K  +ED +KR  +  +Q    E K I     + +EE   +KTK   E 
Sbjct: 642 KEEERKRREEEEKKKREDEVKREEEGRRQKVEAELKLIEDEHKQRLEELE-KKTKKEEEK 700

Query: 441 KASK 452
           K S+
Sbjct: 701 KRSE 704



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +3

Query: 258 TKKSKGQRREDNMKNVKE-----D*IKRM*KPEKQNKSQEKK*IRGYLTEVVEERRLRKT 422
           TKK + ++R +++ N +E     + IK+M +  ++   +EK+ I        EER+LR+ 
Sbjct: 694 TKKEEEKKRSEHVNNDEELDRLQEEIKQMGEENEKRYEEEKQKIEDDKKRWEEERKLRED 753

Query: 423 KIN 431
           +IN
Sbjct: 754 EIN 756


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 321  KRM*KPEKQNKSQEKK*IRGYLTEVVEERRL---RKTKINHEIKA 446
            K++ KP K+ +   K  I   L E+ EE+RL   +K K N E+K+
Sbjct: 2353 KKVFKPSKKKRDPFKDAIEETLREIEEEKRLQEQKKVKDNEEVKS 2397


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/67 (28%), Positives = 39/67 (58%)
 Frame = +3

Query: 228 VEKIAIESFITKKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEER 407
           +E+  +E  I K+ + +R+E   K VKE+ I R+ K  K+ ++ +++  R    +  EE+
Sbjct: 336 IEQRRMEEEIKKEEEKKRKEAEEKRVKEEQI-RLEKERKRKEADDRQ--REEARKEEEEK 392

Query: 408 RLRKTKI 428
           R R+ ++
Sbjct: 393 RKREGEV 399


>SB_33565| Best HMM Match : SET (HMM E-Value=3.99931e-42)
          Length = 601

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 499 VVRVSLFIIMPVAVAFFDAFIS*LILVFLNLLSSTTSVRYPRIYFFS 359
           ++R ++++ + +A A  D   S  +L   +       +R+PRI FFS
Sbjct: 513 IIRQAIYLCVTLATAIVDFLSSGYVLYSTDTNLFFQDIRFPRIAFFS 559


>SB_9028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 499 VVRVSLFIIMPVAVAFFDAFIS*LILVFLNLLSSTTSVRYPRIYFFS 359
           ++R ++++ + +A A  D   S  +L   +       +R+PRI FFS
Sbjct: 101 IIRQAIYLCVTLATAIVDFLSSGYVLYSTDTNLFFQDIRFPRIAFFS 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,951
Number of Sequences: 59808
Number of extensions: 238705
Number of successful extensions: 582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)