Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120726.seq
         (692 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2884|AAF49360.1|  550|Drosophila melanogaster CG13724-P...    31   1.1  

>AE014296-2884|AAF49360.1|  550|Drosophila melanogaster CG13724-PA
           protein.
          Length = 550

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 259 RKKVRGREEKTI*RM*KKTELRECKNQKSKINPKRKNKF 375
           RK++R R  K I R  K+T  R  K +K K N K+K K+
Sbjct: 229 RKRIR-RRRKRIRRRRKRTRRRRRKRRKKKRNKKKKKKY 266


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,080,457
Number of Sequences: 53049
Number of extensions: 344227
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)