Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120726.seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical pr...    32   0.45 
Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        28   7.3  
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    27   9.6  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    27   9.6  
AF045644-1|AAC02601.1|  543|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical
           protein T09E11.7 protein.
          Length = 663

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 270 YFFSL*MTRLQFFQLKLSSYLLYFDFAISIS*YIKFDISFDYICSKIFNLLCIHTFLMYF 91
           Y F L M  L FF+ +L S L+   F I    +I + +  DY+ ++    +   ++ +Y 
Sbjct: 246 YSFILPMISLAFFKYELPSTLMRLIFTIFTGCFILYSVDDDYLENRFLTYIGDISYTLYL 305

Query: 90  SH 85
            H
Sbjct: 306 VH 307


>Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical
           protein T05D4.5 protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +3

Query: 228 VEKIAIESFITKKSKGQRREDNMKNVKED*IK--RM*KPEKQNKSQEKK*IRGYLTEVVE 401
           +EK+ +++  ++K      +  MKN+K +  K   + K  K  K ++KK   G+++ +  
Sbjct: 335 MEKLKVDA--SRKPMLSHWDLEMKNIKAEKKKIGAVKKKIKAEKKEDKKKPMGWMSTLKM 392

Query: 402 ERRLRKTKINHEIKASKK 455
           ER  R+TK   E +  KK
Sbjct: 393 ERDERRTKRKEEEEKKKK 410


>U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK354.3 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +3

Query: 225 LVEKIAIESFITKKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEE 404
           LVE   +     +  K + ++D+ K+ K+D  K   K EK+ + +E+K       E  EE
Sbjct: 214 LVENPIVTEMSDRDEKKEEKKDDKKDEKKDEKKEAKKEEKKEEKKEEK-----KEEKKEE 268

Query: 405 RRLRKTKINHEIKASK 452
           ++  K + + E  A+K
Sbjct: 269 KKDDKKEDDKEKSATK 284


>U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical
           protein T23B3.5 protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 261 KKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEERRLRKTKINHEI 440
           +K  G ++ED+ K+ K+D  K+  K +   K  E+K       +  E++  +K +   + 
Sbjct: 95  EKKDGDKKEDDKKDEKKDEDKKDEKKDADEKKDEEKKDDKKDEKKDEKKDEKKDEKKEKS 154

Query: 441 KASKKAT 461
           K SKK++
Sbjct: 155 KKSKKSS 161


>U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical
           protein C33G8.3 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 261 KKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEERRLRKTK 425
           KK + +  E++    K+D  K     E+++K ++KK       E  EE + RK K
Sbjct: 85  KKDEDEEEEEDKDKKKKDKKKNKDSEEEEDKKKDKKKKNDSSDESEEENKKRKNK 139


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/19 (57%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
 Frame = -2

Query: 565  GCYIQ-LLPVLNRYLHVAV 512
            GC I+ LLP++++YLHVA+
Sbjct: 1009 GCLIERLLPIMDQYLHVAL 1027


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/19 (57%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
 Frame = -2

Query: 565  GCYIQ-LLPVLNRYLHVAV 512
            GC I+ LLP++++YLHVA+
Sbjct: 1007 GCLIERLLPIMDQYLHVAL 1025


>U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical
           protein ZK354.7 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 261 KKSKGQRREDNMKNVKED*IKRM*KPEK-QNKSQEKK*IRGYLTEVVEERRLRKTKINHE 437
           K+ K + +++  K  K+D  K   K EK + K +EKK       E  EE++  K   N E
Sbjct: 146 KEEKKEEKKEEKKEDKKDDKKEAKKEEKKEEKKEEKK--EEKKEEKKEEKKEEKNDENKE 203

Query: 438 IKASKK 455
            K  +K
Sbjct: 204 EKKEEK 209


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/19 (57%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
 Frame = -2

Query: 565  GCYIQ-LLPVLNRYLHVAV 512
            GC I+ LLP++++YLHVA+
Sbjct: 1007 GCLIERLLPIMDQYLHVAL 1025


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 439 IS*LILVFLNLLSSTTSVRYPRIYFFSWDLF 347
           IS L    L L  STTS   P +YFFS+ LF
Sbjct: 517 ISILFCSGLLLYCSTTSTLPPAVYFFSFFLF 547


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 439 IS*LILVFLNLLSSTTSVRYPRIYFFSWDLF 347
           IS L    L L  STTS   P +YFFS+ LF
Sbjct: 517 ISILFCSGLLLYCSTTSTLPPAVYFFSFFLF 547


>AF045644-1|AAC02601.1|  543|Caenorhabditis elegans Hypothetical
           protein F57H12.5 protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +3

Query: 261 KKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEERRLRKTKINHEI 440
           ++ +  R+E+  +N +ED  +   + +K+ K + +K  R      +E    +  K  H  
Sbjct: 133 RERQEDRKEERKENKREDKKEEKKEEKKEEKKEVRKDCRENSVYFMERSDEKGVKKKHSK 192

Query: 441 KASKKATATGMMMNS 485
           K SK+ T   + M S
Sbjct: 193 KHSKQKTKMWLGMPS 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,509,943
Number of Sequences: 27780
Number of extensions: 206317
Number of successful extensions: 652
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)