Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120726.seq
(692 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 25 0.90
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 25 0.90
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 25 0.90
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 8.4
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 8.4
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 8.4
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 8.4
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 21 8.4
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 8.4
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 8.4
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 8.4
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 8.4
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 24.6 bits (51), Expect = 0.90
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 490 VSLFIIMPVAVAFFDAFIS*LILVFLNLLSST 395
V+ II+PVA++FF+ +S + F N LS T
Sbjct: 100 VANLIILPVAISFFNDDLSTRWIAF-NCLSDT 130
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 24.6 bits (51), Expect = 0.90
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 490 VSLFIIMPVAVAFFDAFIS*LILVFLNLLSST 395
V+ II+PVA++FF+ +S + F N LS T
Sbjct: 100 VANLIILPVAISFFNDDLSTRWIAF-NCLSDT 130
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 24.6 bits (51), Expect = 0.90
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 490 VSLFIIMPVAVAFFDAFIS*LILVFLNLLSST 395
V+ II+PVA++FF+ +S + F N LS T
Sbjct: 100 VANLIILPVAISFFNDDLSTRWIAF-NCLSDT 130
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 92 NNYNNNYKPLYY 103
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 92 NNYNNNYKPLYY 103
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 92 NNYNNNYKPLYY 103
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 92 NNYNNNYKPLYY 103
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 325 NNYNNNYKPLYY 336
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 325 NNYNNNYKPLYY 336
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 325 NNYNNNYKPLYY 336
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 325 NNYNNNYKPLYY 336
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 239 NFFN*NYHPIYY 204
N +N NY P+YY
Sbjct: 314 NNYNNNYKPLYY 325
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,010
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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