Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120726.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24130.1 68418.m02837 expressed protein                             29   2.9  
At3g28770.1 68416.m03591 expressed protein                             29   2.9  
At3g51640.1 68416.m05663 expressed protein                             28   5.1  
At1g17430.1 68414.m02130 hydrolase, alpha/beta fold family prote...    28   5.1  
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains...    28   6.8  
At3g51650.1 68416.m05664 expressed protein                             28   6.8  

>At5g24130.1 68418.m02837 expressed protein 
          Length = 316

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 378 GYLTEVVEERRLRKTKINHEIKASKKATA 464
           GYL  V EE R+RK + +HE  +  K  A
Sbjct: 258 GYLPLVAEEERIRKMEADHEASSRAKPRA 286


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 261  KKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEERRLRKTKINHEI 440
            KK K + +  NMK  +ED  + +    K+ +  +K+  +   +++ EE +  K K   E 
Sbjct: 945  KKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESED 1004

Query: 441  KASK 452
             ASK
Sbjct: 1005 SASK 1008


>At3g51640.1 68416.m05663 expressed protein
          Length = 826

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 321 KRM*KPEKQNKSQEKK*IRGYLTEVVEERRLRKTKINHEIKASKKATA 464
           KR  + EK++  +E++  R  +  +VEERR  + +I    K SK + A
Sbjct: 262 KRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEKCSKLSVA 309


>At1g17430.1 68414.m02130 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 332

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 541 VLNRYLHVAVSLIYVVRVSLFIIMPVAVAFFDAFIS*LILVFLNLLSSTTSV 386
           +  RYL +  +L   + +S F   P+ +   D+F+S   LVF +L   T  +
Sbjct: 9   LFRRYLSIVFTLFQRL-ISCFFDFPILIKIADSFLSLYFLVFCDLRPVTVDL 59


>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 514

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 234 KIAIESFITKKSKGQRR-EDNMKNVKED*-IKRM*KPEKQNKSQEKK 368
           K  IE+   +K + +RR ED  K  KE+  IKR  + EK+ K +EK+
Sbjct: 457 KRLIEALKEEKEEAKRRIEDEEKKKKEEEEIKRKKREEKKIKKEEKE 503


>At3g51650.1 68416.m05664 expressed protein
          Length = 826

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 321 KRM*KPEKQNKSQEKK*IRGYLTEVVEERRLRKTKINHEIKASKKATA 464
           KR  + EK++  +E++  R  +  +VEERR  + +I    K SK + A
Sbjct: 262 KRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEKCSKFSVA 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,081
Number of Sequences: 28952
Number of extensions: 175144
Number of successful extensions: 426
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)