Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120725.seq
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    29   4.6  
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685...    29   4.6  
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    28   6.0  

>11_04_0442 -
           17790811-17790889,17791047-17791114,17791144-17791166,
           17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 345 FQSLFCGDREFSDPLLKLEDGHDIISFYS 259
           +Q  F G    S PLLK  + HD++SF+S
Sbjct: 537 WQICFSGTNMSSIPLLKYVNRHDVLSFWS 565


>06_03_0311 +
           19466258-19466303,19466496-19467087,19468059-19468524,
           19470028-19470081,19470112-19470226,19470499-19470605
          Length = 459

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +3

Query: 9   GLPHPSNRNALLLHGRNKQGGGTYPRGLTRGPTTSNYANYNFAGLIFIT 155
           GL  P  R  +   G  +Q        L   P T   A  NFAGL F++
Sbjct: 333 GLYQPDGRTMVYNVGLMQQSTSAASLSLAASPATKTDAKKNFAGLCFLS 381


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 233 AGTNFSNEICTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTSCESARIGTTALLI 57
           +GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G      + R+      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 56  SAV 48
           +AV
Sbjct: 89  NAV 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,472,547
Number of Sequences: 37544
Number of extensions: 345153
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)