Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120725.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)                    33   0.29 
SB_55211| Best HMM Match : ADK_lid (HMM E-Value=9.5)                   30   2.0  
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 29   3.5  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.5  
SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.5  
SB_31888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
          Length = 159

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 425 LTDYPI-YYILKYVILYCQTPHSDVECYSVSHRTDLGAIYYISFYL*CVLNNTXXXXXXX 601
           +T Y + YY+  Y + YC TP+   +C +  H T     Y++++   CV           
Sbjct: 8   VTSYHMTYYVTSYHVTYCMTPYHVPDCVTPYHVTYYVTPYHVTY---CVTPYHVTYCVTP 64

Query: 602 XXXSVRV*CKFVLXISLLLYHVT 670
              +  V   + +  S+ LYHVT
Sbjct: 65  YHVTYYV-TPYHVTYSVTLYHVT 86


>SB_55211| Best HMM Match : ADK_lid (HMM E-Value=9.5)
          Length = 123

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 443 ILDSQLVVGREYCDSVASCLA-SIAC 369
           ++DS   + R YCD+VA+C   S+AC
Sbjct: 3   VIDSNWSIKRPYCDAVANCATKSLAC 28


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -3

Query: 554 KNLCNKL--HQDPFYAKQNNIRH 492
           KN+ NKL  HQ+ F+A QN +RH
Sbjct: 620 KNISNKLISHQEAFHAMQNVLRH 642


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 601 LXINNSNCIIKNTLQIKTYVINCTKIRSMRN 509
           + I NSN I+KN +Q+    ++C  + S RN
Sbjct: 701 IIIINSNKILKNNIQVPLVAVDCGPLPSPRN 731


>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 601 LXINNSNCIIKNTLQIKTYVINCTKIRSMRN 509
           + I NSN I+KN +Q+    ++C  + S RN
Sbjct: 132 IIIINSNKILKNNIQVPLVAVDCGPLPSPRN 162


>SB_31888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 SMLFYIVKPLIAMSNVILFRIERILVQFIT*VFICNVFL 572
           +ML +I   L++M  ++LF    +L      +FICN+ L
Sbjct: 112 TMLLFICNMLLSMGTMLLFICNMLLSMGTMLLFICNMML 150



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 SMLFYIVKPLIAMSNVILFRIERILVQFIT*VFICNVFL 572
           +ML +I   L++M  ++LF    +L      +FICN+ L
Sbjct: 154 TMLLFICNMLLSMGTMLLFVCNMLLSMGTMLLFICNMML 192



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 SMLFYIVKPLIAMSNVILFRIERILVQFIT*VFICNVFL 572
           +ML +I   L++M  ++LF    +L      +FICN+ L
Sbjct: 56  TMLLFICNMLLSMGTMLLFICNMMLSMGTMLLFICNMLL 94



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 SMLFYIVKPLIAMSNVILFRIERILVQFIT*VFICNVFL 572
           +ML +I   L++M  ++LF    +L      +FICN+ L
Sbjct: 84  TMLLFICNMLLSMGTMLLFICNMMLSMGTMLLFICNMLL 122



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 SMLFYIVKPLIAMSNVILFRIERILVQFIT*VFICNVFL 572
           +ML +I   L++M  ++LF    +L      +FICN+ L
Sbjct: 126 TMLLFICNMLLSMGTMLLFICNMMLSMGTMLLFICNMLL 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,692,487
Number of Sequences: 59808
Number of extensions: 415591
Number of successful extensions: 858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)