Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120725.seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    28   7.2  

>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 9   GLPHPSNRNALLLHGRNKQGGGTYPRGLTRGPTTSNYAN 125
           G P  SN+N +L    N QG     +G+    TT  Y N
Sbjct: 162 GFPQSSNQNQVLRDQSNNQGYMNNNQGMYNTQTTQGYGN 200


>Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical
           protein K08G2.7 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 432 TIQYIIYLSMLFYIVKPLIAMSNVILFRIERILVQFIT*VFIC-NVFLIIQFELFI 596
           T+Q+II++  L+++ +PL+ +    +  ++ +  Q     F   ++FLI+   L++
Sbjct: 149 TLQWIIFIEYLYFLAEPLLLVYFAHISNLKHLNYQIDMYFFFGEHIFLILSNSLYV 204


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 366 VAESLAIFQSLFCGDREFSDPLLKLEDGHDIISF 265
           ++E    FQSLFCGD  + + ++   +  D   F
Sbjct: 34  LSEHCTYFQSLFCGDSNYQEHIISDVEPQDFQKF 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,986
Number of Sequences: 27780
Number of extensions: 327741
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)