Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120722.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    28   0.062
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      23   2.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.3  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 64  MISYNLVKETGIEIPHSQDVCNDETAAQNCK 156
           M   NL+KE   E+   Q +CN E A   C+
Sbjct: 30  MSDINLIKEEFDELGRLQRICNGEVAVNKCE 60


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 233 RKPHL*LFTIVGRKKVWVSFGQVVRNV 313
           R  H+    +V  + VWVSF Q  +NV
Sbjct: 19  RGEHMVGTIVVVVRGVWVSFNQTAQNV 45


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 465 NKYVVDNLNLIVNKKVRSRTNTVV-SLIFCLI 557
           NK++ DN++L   K+V     TVV S   CLI
Sbjct: 274 NKHI-DNISLRARKQVVLMLGTVVLSFFLCLI 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,705
Number of Sequences: 336
Number of extensions: 3665
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)