Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120722.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    28   1.1  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.3  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   3.3  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    26   4.4  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   7.7  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    25   7.7  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   7.7  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 557  NYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNV 670
            N   +DNI + N++E ++ +  ED S+H  +   T +V
Sbjct: 967  NSTENDNITTENSSEIVQVIHTEDDSLHFDDNVSTDSV 1004


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 151 CKKCHFVDVHHTFKAA---LTSYFNLDMYYAQ-TTFVTFYNRWAKESVGFFW 294
           C +CH  D +HTF+ A   +  Y  ++ +Y +  T     N   K+    +W
Sbjct: 350 CDECHDADQNHTFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQTSAYW 401


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 99  YAGFFNQIVRNHKSNFIKRYH 37
           +  F N I + HK+N+I+ YH
Sbjct: 882 FKNFINVITQLHKTNYIQAYH 902


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 473 IFVWGIVGKLYTFRIL*YLTHIRRYKKIIRCSLNFITLFTTKH 345
           +F  G+   ++  R+L +  HIR  K+I+      + L T KH
Sbjct: 113 VFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKH 155


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 432 SESVKFPDNPPNKYVVDNLNLIVNKKV 512
           + ++   D+  NKYV++NLN+I N ++
Sbjct: 209 ASTMSLTDDFYNKYVLENLNIINNLQI 235


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 142 AQNCKKCHFVDVHHTFKAALTSYFNLDMYYAQTTFVTFYNRWAKESVGFFW 294
           A+N K      VH+  K      +NL++Y  Q+ F  F + +  E +   W
Sbjct: 32  ARNSKPLRSFCVHYAIKELKEKTYNLELY--QSLFEEFQDCFENEQLDVEW 80


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 578 IASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN 676
           I + N+ ENL        ++H+V++YL    +N
Sbjct: 68  ILNRNSPENLYLFINHPSNVHLVDRYLIHRTEN 100


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 342 IMLSRKESNEIETASNNFFVSPYVSQIL 425
           ++ S  ES  +E +S N  V+PYVS++L
Sbjct: 749 MLFSAIESRVLEVSSLNPAVAPYVSEML 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,356
Number of Sequences: 5004
Number of extensions: 55429
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)