Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120722.seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23176-5|AAX88833.1| 241|Caenorhabditis elegans Hypothetical pr... 30 1.3
U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid elon... 29 2.3
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr... 29 4.1
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 29 4.1
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 29 4.1
U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical pr... 28 5.4
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z35598-3|CAA84655.3| 525|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC006625-4|AAK68276.1| 446|Caenorhabditis elegans Hypothetical ... 28 7.1
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 27 9.4
U80838-7|AAC71112.3| 581|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL031634-3|CAA21036.1| 556|Caenorhabditis elegans Hypothetical ... 27 9.4
>U23176-5|AAX88833.1| 241|Caenorhabditis elegans Hypothetical
protein F21H12.7 protein.
Length = 241
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 121 VCNDETAAQNCKKCHFVDV--HHTFKAALTSYFNLDMYYAQTTFVTFYNRWAKESVGFF 291
+C+ T ++C D ++TF A S N Y +QT F+ FY + + V ++
Sbjct: 86 MCSTYTTLRHCHSDVINDCLNYNTFNAIFGSESNAAYYISQTGFLEFYCNYGNDFVAYY 144
>U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid
elongation protein 3 protein.
Length = 320
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 545 LLFNNYKYHDNIASNNNAENLKKVKKE 625
LLF N+ YH + NN +KK KKE
Sbjct: 254 LLFANFFYHAYVKKNNRYTEVKKDKKE 280
>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical protein
ZK593.4 protein.
Length = 1477
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 321 KNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKYV-VDNLNLI 497
K +F L ML +++N +E +NNF +P + Q+ +S++ D KY+ + +I
Sbjct: 986 KLVFELQQML--RDANTLEVIANNFCENPALDQLQSIWQSLRETDWFYEKYINMVRYEII 1043
Query: 498 VNKKVRSRTNTVVSLI 545
K++S + + ++
Sbjct: 1044 HVAKIKSMIDAAIPVL 1059
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 339 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 461
P RKE+ E+E N YV Q+ ++ K P NP
Sbjct: 244 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 284
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 339 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 461
P RKE+ E+E N YV Q+ ++ K P NP
Sbjct: 348 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 388
>U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical
protein F20D12.1b protein.
Length = 867
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 369 EIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNL 494
E++ S ++ S +SQ+L+Y+ FP D PPN+ V N+ L
Sbjct: 219 ELDPQSTQYYASIPLSQMLQYA----FPRDFPPNRIVNPNMKL 257
>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
protein F20D12.1a protein.
Length = 1030
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 369 EIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNL 494
E++ S ++ S +SQ+L+Y+ FP D PPN+ V N+ L
Sbjct: 382 ELDPQSTQYYASIPLSQMLQYA----FPRDFPPNRIVNPNMKL 420
>Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical
protein F11F1.5 protein.
Length = 246
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +3
Query: 237 NHICDFLQSLGERKCGFLLGKLYEMYQDKNLFTLP---IMLSRKESNEIETASNNFFVSP 407
N + D LQSL + +LGKL ++ DKNL ++ + K +N+IE + F
Sbjct: 175 NEVADILQSLPD-----ILGKLSKIVDDKNLTSIEKNNAINQLKGTNKIELNTIIFI--- 226
Query: 408 YVSQILKYSESVKFPDNPPN 467
++Q+L + P P N
Sbjct: 227 -ITQLLNGGALPELPPTPIN 245
>Z35598-3|CAA84655.3| 525|Caenorhabditis elegans Hypothetical
protein F10F2.5 protein.
Length = 525
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 318 DKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPD 455
D ++ ++LSR+E+ +E S+ + Y QI+K K PD
Sbjct: 324 DAATWSSAVVLSRRENEGLEVMSDARYAPIYCEQIVKGLSYTKCPD 369
>AC006625-4|AAK68276.1| 446|Caenorhabditis elegans Hypothetical
protein C55B7.5 protein.
Length = 446
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 530 SSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNV 670
+SV L ++Y DNI +NN++ K KK + + VE+ + + V
Sbjct: 288 NSVEELDSDDYASDDNIEKSNNSDQQLKSKKIETQVIKVEEIVEETV 334
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 408 YVSQILKYSESVKFPDNPPNKYVVDNLNLI 497
YV +LKY+E +K DN +Y D +I
Sbjct: 1772 YVGGVLKYTEMLKATDNTMQEYASDEEMMI 1801
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 408 YVSQILKYSESVKFPDNPPNKYVVDNLNLI 497
YV +LKY+E +K DN +Y D +I
Sbjct: 1772 YVGGVLKYTEMLKATDNTMQEYASDEEMMI 1801
>U80838-7|AAC71112.3| 581|Caenorhabditis elegans Hypothetical
protein F47F6.3 protein.
Length = 581
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 133 ETAAQNCKKCHFVDVHHTF 189
E A + CKKC F+D++ F
Sbjct: 516 EIAGRQCKKCRFIDLNPAF 534
>AL031634-3|CAA21036.1| 556|Caenorhabditis elegans Hypothetical
protein Y32B12C.3 protein.
Length = 556
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 297 KLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQ-ILK 428
K+ E+YQ++ L T I L E+E AS F V P+V + ILK
Sbjct: 5 KINEVYQNRKLQTTEISL------EVEDASQLFLVLPFVDRNILK 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,669
Number of Sequences: 27780
Number of extensions: 316491
Number of successful extensions: 975
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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