BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120722.seq (685 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g41460.1 68418.m05035 fringe-related protein strong similarit... 29 2.9 At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr... 28 5.0 At5g23210.2 68418.m02715 serine carboxypeptidase S10 family prot... 28 6.6 At5g23210.1 68418.m02714 serine carboxypeptidase S10 family prot... 28 6.6 At3g13000.2 68416.m01620 expressed protein contains Pfam profile... 28 6.6 At3g13000.1 68416.m01619 expressed protein contains Pfam profile... 28 6.6 At5g56170.1 68418.m07007 expressed protein contains similarity t... 27 8.8 At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 27 8.8 >At5g41460.1 68418.m05035 fringe-related protein strong similarity to unknown protein (pir||T13026) similarity to predicted proteins + similar to hypothetical protein GB:AAC23643 [Arabidopsis thaliana] + weak similarity to Fringe [Schistocerca gregaria](GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling. Length = 524 Score = 29.1 bits (62), Expect = 2.9 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 538 DTTVFVRERTFLLTIKFKLSTTYLFGGLSGNFTLSEYFNI*LTYG 404 D TVFV E + K+ + Y G LS + + YF+ + YG Sbjct: 212 DDTVFVAENLIRVLRKYDHNQMYYIGSLSESHLQNIYFSYGMAYG 256 >At1g71830.1 68414.m08301 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 625 Score = 28.3 bits (60), Expect = 5.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3 Query: 683 LLHYPHSESNTVRQCACCRPPS*PFLNFP 597 LL YP+ + +V C RPPS P L++P Sbjct: 373 LLVYPYMANGSVASCLRERPPSQPPLDWP 401 >At5g23210.2 68418.m02715 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; Length = 403 Score = 27.9 bits (59), Expect = 6.6 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +3 Query: 231 RANHICDFLQSLGERKCGFLLGKLYEMYQDKNLFTL 338 + N CDF Q L ++C L + +++Y+ ++++L Sbjct: 168 KVNKNCDFKQKLVTKECNDALDEYFDVYKILDMYSL 203 >At5g23210.1 68418.m02714 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; Length = 363 Score = 27.9 bits (59), Expect = 6.6 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +3 Query: 231 RANHICDFLQSLGERKCGFLLGKLYEMYQDKNLFTL 338 + N CDF Q L ++C L + +++Y+ ++++L Sbjct: 168 KVNKNCDFKQKLVTKECNDALDEYFDVYKILDMYSL 203 >At3g13000.2 68416.m01620 expressed protein contains Pfam profile PF04784: Protein of unknown function, DUF547 Length = 582 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 417 QILKYSESVKFPDNPPNKYVVDNLNLIVNKKVRSRTNTVVSL 542 ++++ + + K P P KY+ D NL+ + VR N +SL Sbjct: 203 RLMRKTNARKLPRGMPPKYLWDQPNLLSEEMVRCMKNIFMSL 244 >At3g13000.1 68416.m01619 expressed protein contains Pfam profile PF04784: Protein of unknown function, DUF547 Length = 553 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 417 QILKYSESVKFPDNPPNKYVVDNLNLIVNKKVRSRTNTVVSL 542 ++++ + + K P P KY+ D NL+ + VR N +SL Sbjct: 174 RLMRKTNARKLPRGMPPKYLWDQPNLLSEEMVRCMKNIFMSL 215 >At5g56170.1 68418.m07007 expressed protein contains similarity to GPI-anchored protein Length = 168 Score = 27.5 bits (58), Expect = 8.8 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Frame = +2 Query: 428 VFGKCKVSRQSPKQICGGQFKFNC*QKSTLTYKYSSVANLLF---NNY-KYHDNIASNNN 595 + KCK + PK+ CG F C L S A +F N Y KY + +N Sbjct: 61 ITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLYGKYPPGLFANQC 120 Query: 596 AENLKKVKKEDGS 634 E + ++ GS Sbjct: 121 KEGKEGLECPAGS 133 >At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA helicase -Mus musculus,PIR2:I84741 Length = 621 Score = 27.5 bits (58), Expect = 8.8 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +2 Query: 566 YHDNIASNNNAENLKKVKKEDG 631 YH + + ENLKK K E+G Sbjct: 400 YHGEVPAEQRVENLKKFKDEEG 421 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,768,461 Number of Sequences: 28952 Number of extensions: 263102 Number of successful extensions: 747 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 747 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1447936096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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