Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120722.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41460.1 68418.m05035 fringe-related protein strong similarit...    29   2.9  
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    28   5.0  
At5g23210.2 68418.m02715 serine carboxypeptidase S10 family prot...    28   6.6  
At5g23210.1 68418.m02714 serine carboxypeptidase S10 family prot...    28   6.6  
At3g13000.2 68416.m01620 expressed protein contains Pfam profile...    28   6.6  
At3g13000.1 68416.m01619 expressed protein contains Pfam profile...    28   6.6  
At5g56170.1 68418.m07007 expressed protein contains similarity t...    27   8.8  
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    27   8.8  

>At5g41460.1 68418.m05035 fringe-related protein strong similarity
           to unknown protein (pir||T13026) similarity to predicted
           proteins + similar to hypothetical protein GB:AAC23643
           [Arabidopsis thaliana] + weak similarity to Fringe
           [Schistocerca gregaria](GI:6573138);Fringe encodes an
           extracellular protein that regulates Notch signalling.
          Length = 524

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 538 DTTVFVRERTFLLTIKFKLSTTYLFGGLSGNFTLSEYFNI*LTYG 404
           D TVFV E    +  K+  +  Y  G LS +   + YF+  + YG
Sbjct: 212 DDTVFVAENLIRVLRKYDHNQMYYIGSLSESHLQNIYFSYGMAYG 256


>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 683 LLHYPHSESNTVRQCACCRPPS*PFLNFP 597
           LL YP+  + +V  C   RPPS P L++P
Sbjct: 373 LLVYPYMANGSVASCLRERPPSQPPLDWP 401


>At5g23210.2 68418.m02715 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 403

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 231 RANHICDFLQSLGERKCGFLLGKLYEMYQDKNLFTL 338
           + N  CDF Q L  ++C   L + +++Y+  ++++L
Sbjct: 168 KVNKNCDFKQKLVTKECNDALDEYFDVYKILDMYSL 203


>At5g23210.1 68418.m02714 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 363

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 231 RANHICDFLQSLGERKCGFLLGKLYEMYQDKNLFTL 338
           + N  CDF Q L  ++C   L + +++Y+  ++++L
Sbjct: 168 KVNKNCDFKQKLVTKECNDALDEYFDVYKILDMYSL 203


>At3g13000.2 68416.m01620 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 582

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 417 QILKYSESVKFPDNPPNKYVVDNLNLIVNKKVRSRTNTVVSL 542
           ++++ + + K P   P KY+ D  NL+  + VR   N  +SL
Sbjct: 203 RLMRKTNARKLPRGMPPKYLWDQPNLLSEEMVRCMKNIFMSL 244


>At3g13000.1 68416.m01619 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 553

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 417 QILKYSESVKFPDNPPNKYVVDNLNLIVNKKVRSRTNTVVSL 542
           ++++ + + K P   P KY+ D  NL+  + VR   N  +SL
Sbjct: 174 RLMRKTNARKLPRGMPPKYLWDQPNLLSEEMVRCMKNIFMSL 215


>At5g56170.1 68418.m07007 expressed protein contains similarity to
           GPI-anchored protein
          Length = 168

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 428 VFGKCKVSRQSPKQICGGQFKFNC*QKSTLTYKYSSVANLLF---NNY-KYHDNIASNNN 595
           +  KCK  +  PK+ CG    F C     L    S  A  +F   N Y KY   + +N  
Sbjct: 61  ITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLYGKYPPGLFANQC 120

Query: 596 AENLKKVKKEDGS 634
            E  + ++   GS
Sbjct: 121 KEGKEGLECPAGS 133


>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 566 YHDNIASNNNAENLKKVKKEDG 631
           YH  + +    ENLKK K E+G
Sbjct: 400 YHGEVPAEQRVENLKKFKDEEG 421


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,461
Number of Sequences: 28952
Number of extensions: 263102
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)