Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120719.seq
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    28   1.1  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    26   4.5  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
 Frame = -3

Query: 457 LILTQSCMYADKLTFSIQLASFISAAFKCLYLNT*S*SMYCLMGSLNHSF--SSM*LATM 284
           + LT++    ++L F  Q            Y NT        +  LN S   +++ L T 
Sbjct: 428 IALTENAQIYEELDFEKQRLFSACIEVYLSYCNT-----LIFLHRLNESVEGANICLDTA 482

Query: 283 RFQFNLCAYF-AAPTTRGYCNFWIFLPCP 200
           R   N+  +F   P  +  C  W+FL CP
Sbjct: 483 RRAINVLKFFFIIPIAKNVCYLWVFLYCP 511


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 237 RVVGAAKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYD 353
           R++G  +Y H   WK +   H    E  KE   +Y+  D
Sbjct: 98  RILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVD 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,727
Number of Sequences: 5004
Number of extensions: 64258
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)