Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120719.seq
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436...    32   0.51 
09_04_0271 + 16271569-16271767,16272072-16272206,16272286-162725...    29   2.7  
04_04_1556 - 34380013-34380021,34381175-34381271,34381570-343816...    28   6.2  
02_01_0056 - 419393-420208                                             28   8.3  

>04_04_0075 -
           22542486-22542882,22543181-22543362,22543452-22543637,
           22543959-22544057,22546198-22546314,22547739-22547855
          Length = 365

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -2

Query: 263 CVFCCTDNTRLL*FLDISSMSNKSPNASIKSCVKNFCS----DTNDQIKCD 123
           C+ C T   R   F D+S   +   N+SI SC+KNFCS    +  D+  CD
Sbjct: 182 CLRCETVTARDETFFDLSV--DIEQNSSITSCLKNFCSTETLNAEDKFFCD 230


>09_04_0271 +
           16271569-16271767,16272072-16272206,16272286-16272548,
           16272865-16272996,16273083-16273199,16273752-16273904,
           16274417-16274529,16274600-16274753,16274900-16275118
          Length = 494

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 670 MRKHVSECSTRAGRXTQSHWSIHFQSRNVTC 578
           MRK VS+ +TR G     HW I   +  V C
Sbjct: 196 MRKKVSDAATREGAKLLDHWFIGCHATYVVC 226


>04_04_1556 -
           34380013-34380021,34381175-34381271,34381570-34381631,
           34382072-34382163,34382387-34382420,34383434-34383496,
           34383951-34383966,34385694-34385783,34386253-34386596
          Length = 268

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 595 SRNVTCSPNPGYSSNTSM*SDPRYAVGDQFSSCTRPSRK 479
           S  +  SPN G   N S+    R + GD FSS   P  K
Sbjct: 54  SAGLFVSPNTGVLGNASVAGPSRSSSGDAFSSTVAPKYK 92


>02_01_0056 - 419393-420208
          Length = 271

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 333 KQYIDYDYVFKYKHLNAALINDASCMENVNLSAYMQDCVKI 455
           KQY+ Y  + +    +A L N+    E +++S  ++DC+ I
Sbjct: 28  KQYVYYSQLIRSIEHDAELQNEVFHTEKLHISKSVKDCINI 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,237,899
Number of Sequences: 37544
Number of extensions: 397576
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)