Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120719.seq
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.39 
SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)              29   3.6  
SB_53411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_59513| Best HMM Match : PSK_trans_fac (HMM E-Value=9.5)             28   6.4  
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)                     28   6.4  
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)              28   6.4  
SB_43937| Best HMM Match : Lipoprotein_17 (HMM E-Value=8.4)            28   6.4  
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  

>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 14   RANVTDAPILFTCFATNWIGKLFQFCRCR*QSPTGLNRI*FGRWCLSK 157
            RAN T+AP+L T FA  W+    Q+C        G + I +   CL K
Sbjct: 1490 RANCTNAPLLRTLFAKLWLTS--QYCPASLDLVCGTDNITYSNECLMK 1535


>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 357 VFKYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLREG 491
           +   KH+N   + D    EN++ +  + +CVK +D L+     +G
Sbjct: 57  IINTKHMNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQG 101


>SB_53411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 208 PCPTSRQTRV*NLASKIFAQTPTTKS 131
           PCPTSRQT +  +  K+ + TP+T +
Sbjct: 175 PCPTSRQTHMDGI-KKLVSSTPSTST 199


>SB_59513| Best HMM Match : PSK_trans_fac (HMM E-Value=9.5)
          Length = 141

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 691 KLISKLWMRKHVSECSTRAGRXTQSHWSIHFQSRNVTC 578
           KLI K+W ++  +    R  R  + +W+  F++R + C
Sbjct: 70  KLIIKMWEQRLENRRPYRVNRAAEHNWNEIFETRKLEC 107


>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 642

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 363 KYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLRE 488
           ++++  + L+ND  CMEN  L +Y+Q      ++  L C R+
Sbjct: 488 EFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 528


>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
          Length = 731

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 366 YKHLNAALINDASCMENVNLSAYMQDCVKISDALILY 476
           YKHL A L  D  C E   +  ++Q  V   DAL +Y
Sbjct: 144 YKHLLACLGVDRVCAERHGVCGFLQFIVVTHDALRVY 180


>SB_43937| Best HMM Match : Lipoprotein_17 (HMM E-Value=8.4)
          Length = 311

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 363 KYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLRE 488
           ++++  + L+ND  CMEN  L +Y+Q      ++  L C R+
Sbjct: 151 EFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 191


>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 363 KYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLRE 488
           ++++  + L+ND  CMEN  L +Y+Q      ++  L C R+
Sbjct: 546 EFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 586


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 363 KYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLRE 488
           ++++  + L+ND  CMEN  L +Y+Q      ++  L C R+
Sbjct: 643 EFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,179,474
Number of Sequences: 59808
Number of extensions: 510226
Number of successful extensions: 1170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)