Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120719.seq
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    29   3.0  
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id...    29   3.9  
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id...    29   3.9  
At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ...    28   6.9  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   9.1  

>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
 Frame = +3

Query: 285 IVASHILLKEWF--KEPIKQYIDYDYVFK-YKH-LNAALINDASCMEN 416
           ++A+  L   +F  KE + +Y  + Y F  YK+ L+A LIN+ SC+ N
Sbjct: 467 LLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLHN 514


>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
           identical to GI:2347098
          Length = 371

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -2

Query: 263 CVFCCTDNTRLL*FLDISSMSNKSPNASIKSCVKNFCS----DTNDQIKCD 123
           C+ C T   R   FLD+S   +   N+SI SC+KNF S       D+  CD
Sbjct: 186 CLRCETVTARDETFLDLSL--DIEQNSSITSCLKNFSSTETLHAEDKFFCD 234


>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
           identical to GI:2347100
          Length = 365

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -2

Query: 263 CVFCCTDNTRLL*FLDISSMSNKSPNASIKSCVKNFCS----DTNDQIKCD 123
           C+ C T   R   FLD+S   +   N+SI SC+KNF S       D+  CD
Sbjct: 181 CLRCETVTARDETFLDLSL--DIEQNSSITSCLKNFSSTETLHAEDKFFCD 229


>At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 558

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 182 SIKSCVKNFCSDTNDQIKCDLNLLAIVIDN 93
           ++K+C +  CS   DQ+ C +N   +  D+
Sbjct: 115 TLKACARALCSSAMDQLHCQINRRGLSADS 144


>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 499

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 342 IDYDYVFKYKHLNAALINDASCMENVNLSAYMQDCV 449
           +D D V  YKHL  + +ND S  +   +  Y Q  +
Sbjct: 290 VDKDIVAPYKHLVPSYVNDTSGFDGRPILLYFQGAI 325


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; contains
           Pfam profile PF00730: HhH-GPD superfamily base excision
           DNA repair protein
          Length = 1729

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 218 DISSMSNKSPNASIKSCVK 162
           ++  MSNKSP  ++KSC K
Sbjct: 111 NVGDMSNKSPEVTLKSCRK 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,387
Number of Sequences: 28952
Number of extensions: 328298
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)