Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120713.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    29   0.48 
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   4.5  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   5.9  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   5.9  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.9  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    26   5.9  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    25   7.8  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 51  SFKDMEEGKCYDISLNYVKTKFSQMIQ 131
           +FK+ +EG+ YD SL +VKT FS  IQ
Sbjct: 844 AFKETQEGENYDTSL-FVKTAFSFEIQ 869


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +2

Query: 329 VVQVECFVNAKTLMNLFKNNIKGSDDINEVFKYLKDNENQIFTIYNIKCQQIFNGA 496
           V  +E F +     + F   + G +    V +Y  +N N      N+ C  + NGA
Sbjct: 260 VYSIEGFSSKSASDSFFVRRLNGEEQKISVAEYFLENHNVRLQYPNLPCILVKNGA 315


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 687 IAHVIFFPIAF*HIYIVRSNAFVRSTNVD 601
           + ++I+ PIA    Y  R  AF++STN D
Sbjct: 216 VLNMIWLPIAVSTKYGFRDEAFMKSTNYD 244


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 565 AYSNLQN----CTNARINISRSNKRVASYNVNMLKSDWEE 672
           ++SN++N    C+N  +N  R  K V    +   + DWE+
Sbjct: 659 SHSNVRNSKKLCSNGSMNCMRQGKAVFPRKIPYQEHDWEQ 698


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 505 HDWNVVN-STRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSDWEENDM 681
           H WN+ + S   ++ + ++ E   +  N  N   N S + +  A  +   LKS  +EN  
Sbjct: 213 HGWNMFSRSVSQQIQDVQDPETRKDYMNAIN---NFSSNVQEGAKQSFTQLKSFLDENVY 269

Query: 682 SDN 690
           S+N
Sbjct: 270 SEN 272


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 428 LKDNENQIFTIYNIKCQQIFNGANVYMIGTWSTLRAS 538
           L DN++QI+T + IK  ++ N   + ++G+   LR +
Sbjct: 230 LPDNKDQIYTPHKIK-TELMNEPKILVLGSEKGLRTN 265


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 428 LKDNENQIFTIYNIKCQQIFNGANVYMIGTWSTLRASNCARLKKTK 565
           L +NE +  T+Y +  + I+   N Y +     L A+ C +   TK
Sbjct: 97  LNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALTK 142


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 283 FVQIAVDFLVINLYFTIILTLSSFSK 206
           F    +DFL +N+ FT++  LS FSK
Sbjct: 96  FYVYLIDFL-LNVLFTVLFALSWFSK 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,656
Number of Sequences: 5004
Number of extensions: 55381
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)