Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120713.seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0062 - 9491389-9491678,9492868-9492968,9492974-9493079,949...    34   0.093
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476...    31   1.1  
01_01_0981 + 7766025-7766753                                           29   2.6  
04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911           28   8.0  
03_05_0997 + 29565311-29565664,29566134-29566298,29566572-295666...    28   8.0  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    28   8.0  

>11_03_0062 -
           9491389-9491678,9492868-9492968,9492974-9493079,
           9493221-9493324,9494887-9495191
          Length = 301

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 150 CEMEIETAIPLSAY-LTNKHFENEDSVNIIVKYKFITRKSTAICTKL 287
           CE  +E A+  S Y L  ++ E E SV IIV  + +T  +  ICT L
Sbjct: 136 CEFHVEVAVCSSLYDLVLQNKEKEQSVGIIVPLEIVTTITLIICTLL 182


>08_02_0733 +
           20546072-20546325,20546924-20547017,20547441-20547624,
           20547722-20547831,20548328-20548423,20548525-20548679,
           20548743-20548986,20549159-20549314,20549600-20549829,
           20552213-20552316,20552420-20552505,20552776-20553066,
           20553383-20553475,20553640-20553735,20553838-20553939,
           20554196-20554266,20554784-20555035,20555786-20556529,
           20557038-20557119,20557192-20557347,20557446-20557655,
           20558282-20558665
          Length = 1397

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 389 IKGSDDINEVFKYLKDNENQIFTIYNIKCQQIFNGANVYMIGTWSTLRASNCARLKKTKP 568
           I G D I  V ++L +N +Q      +K  + + G N Y +G +  L      ++ +  P
Sbjct: 363 INGDDGIAHVKRHLLENASQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSRASP 422


>01_01_0981 + 7766025-7766753
          Length = 242

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 374 DSSVFSH*QNIPLEPRRN--RR*NFCTRLQKQFCTNCC 267
           DS ++   Q +PLE      RR  +C    + FC++CC
Sbjct: 8   DSKMYFAKQRLPLEDLTQTCRRDRYCVSCARAFCSHCC 45


>04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911
          Length = 691

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +1

Query: 484 FQWSKRVHDWNVVNSTRIELCEAKENEAYSNLQNCTNARIN 606
           F W  R H WN++          K NE +   +  TN  +N
Sbjct: 422 FGWCSRGHSWNILRFMCSCFWSKKNNELFLVYELMTNGNLN 462


>03_05_0997 +
           29565311-29565664,29566134-29566298,29566572-29566661,
           29566763-29566891,29568141-29568272,29568904-29568969,
           29569326-29569505,29569664-29569693,29569744-29569839,
           29569959-29570096,29571060-29571142,29571447-29571484,
           29571568-29571788,29572491-29572538
          Length = 589

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +1

Query: 451 LYHLQYKMSTNFQWSKRVHDWNVVNSTRIELCEAKENEAYSNLQNCTN----ARINISRS 618
           + H   K+S   +  K   +  ++  TR ELC+   NEA S L+ CT+     ++N S S
Sbjct: 141 MLHELLKLSAEGRIRKSAPNVFILVPTR-ELCQQVHNEASSLLEFCTSKLKVVQVNASMS 199

Query: 619 NKRV 630
           +K +
Sbjct: 200 DKDI 203


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 490 WSKRVHDWNVVNSTRIELCEAKE--NEAYSNLQNCTNARINISRSNKRVASYNVNMLKS- 660
           WS R  +W+ +N  + ++   ++  +     L+ C + ++ + RS ++  S  +N     
Sbjct: 621 WSTRHREWDAINDLKADMGRLQQGMSSIQRMLEACMDMQLELQRSVRQEVSAALNRFAGP 680

Query: 661 DWEENDMSDN 690
           +    D+SD+
Sbjct: 681 EGYPTDLSDD 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,221
Number of Sequences: 37544
Number of extensions: 291003
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)