Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120713.seq
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_31111| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 33 0.29
SB_10659| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 33 0.29
SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 33 0.29
SB_24531| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00083) 33 0.29
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 33 0.29
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 30 1.5
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5) 30 1.5
SB_50773| Best HMM Match : PAZ (HMM E-Value=2.8) 29 2.7
SB_12553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22) 29 4.7
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 29 4.7
SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06) 28 8.2
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSD 663
V + +CE EN +NL C N N+ +N V NVNM K++
Sbjct: 3409 VCENNVNVCENNENVCENNLNVCENNE-NVCENNVNVCKNNVNMCKNN 3455
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSD 663
V + +CE EN +NL C N +N+ +N+ V N N+ +++
Sbjct: 3458 VCENNVNVCENNENVCENNLNVCEN-NLNVCENNENVCENNENVCENN 3504
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +1
Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSDWEENDMSDN 690
V + +C+ N +N+ C N +N+ +N+ V N+N+ +++ + ++N
Sbjct: 3437 VCENNVNVCKNNVNMCKNNVNVCEN-NVNVCENNENVCENNLNVCENNLNVCENNEN 3492
>SB_31111| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
Length = 379
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
KR H DW N +E K N A +N LQ T + N + +RV LK+DW
Sbjct: 197 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 256
Query: 670 E 672
E
Sbjct: 257 E 257
>SB_10659| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
Length = 498
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
KR H DW N +E K N A +N LQ T + N + +RV LK+DW
Sbjct: 108 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 167
Query: 670 E 672
E
Sbjct: 168 E 168
>SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
Length = 403
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
KR H DW N +E K N A +N LQ T + N + +RV LK+DW
Sbjct: 47 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 106
Query: 670 E 672
E
Sbjct: 107 E 107
>SB_24531| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00083)
Length = 478
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
KR H DW N +E K N A +N LQ T + N + +RV LK+DW
Sbjct: 336 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 395
Query: 670 E 672
E
Sbjct: 396 E 396
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
KR H DW N +E K N A +N LQ T + N + +RV LK+DW
Sbjct: 1076 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 1135
Query: 670 E 672
E
Sbjct: 1136 E 1136
>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
KR H DW N +E K N A +N LQ T + N + +R LK+DW
Sbjct: 1160 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRALQQYTRKLKTDWW 1219
Query: 670 E 672
E
Sbjct: 1220 E 1220
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = +3
Query: 69 EGKCYDISLNYVKTKFSQMIQINEYKECEMEIETAIPLSAYLTNKHFENEDSVNIIVKYK 248
+GKC + KTK I +Y+ +M +T + NK F E+++ + K K
Sbjct: 1261 QGKCDTLEKELFKTKEECSDWIMKYESIQMHNDTLVESLKSCENKIFAQEEAMQTLKKEK 1320
Query: 249 FITRKSTAICTKLFLKSRTKI 311
+ K KS+ ++
Sbjct: 1321 SSMKTDLDNTNKKLSKSKAEL 1341
>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
Length = 1072
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 377 FKNNIKGSDDINEVFKYLKDNENQIFTI-YNIKCQQIFNGANVYMIGT 517
F NNIK S NE + K+ +NQ+ + + + C N +IG+
Sbjct: 417 FANNIKTSTGFNETYDLTKELDNQLSRVGFTVSCYTAKNRITQRIIGS 464
>SB_50773| Best HMM Match : PAZ (HMM E-Value=2.8)
Length = 195
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 126 IQINEYKECEMEIETAIPLSAYLTNKHFENEDSVNIIVKYKFITRKSTAICTKLFLKSRT 305
+ + Y + + +PL+AY NKH + ++S ++ ITR++TA L S T
Sbjct: 9 LPLTSYNKHHKADNSHLPLTAY--NKHHKTDNSHLPLLHTTSITRQTTATYRLLHTTSIT 66
Query: 306 KILTTIPTWF 335
+ +T +F
Sbjct: 67 RQITATYRYF 76
>SB_12553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 228 NIIVKYKFITRKSTAICTKLFLKSRTKILTTIPTWFKWNVLSMR 359
+++ K +T + ++ TK + ++ +LT P KW+VL+ R
Sbjct: 73 SVLTKQLMLTMRPVSVLTKQPVLTKWSVLTKQPVVTKWSVLTKR 116
>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
Length = 431
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 353 NAKTLMNLFKNNIKGSDDINEVFKYLKDNEN-QIFTIYNIKCQQIF 487
N N + NN K SD + +KY + N IFT ++ Q++F
Sbjct: 10 NTSNNENNYSNNNKDSDQDDNGYKYHSNRNNINIFTTEDVLLQKVF 55
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 301 RDFKNNFVQIAVDFLVINLYFTIILTLSSFSKCLLV-K*ALRGIA 170
R N + AV+F+ +++ T+++ L KC++V K LRG++
Sbjct: 679 RSSTNPDILFAVEFVFVHMIATVMMLLIFVPKCIIVRKMKLRGVS 723
>SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 377 FKNNIKGSDDINEVFKYLKDNENQIFTI-YNIKC 475
F NNIK S NE + K+ +NQ+ + + + C
Sbjct: 437 FANNIKTSTGFNETYDLTKELDNQLSRVGFTVSC 470
>SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSDWEENDMSDN 690
V + +CE EN +N +N N +N+ ++N + NVN+ +++ EN +N
Sbjct: 22 VCENNVNVCENNENVCENN-ENVNN-NVNVCKNNVNMCKNNVNVCENN--ENVCENN 74
>SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)
Length = 587
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 523 NSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASY 639
N +RI L + K+N Y + C+N+ I S Y
Sbjct: 70 NDSRIRLYDLKDNSLYCKYKGCSNSSSQIKASFSHDGQY 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,338,279
Number of Sequences: 59808
Number of extensions: 389683
Number of successful extensions: 988
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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