SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120713.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.094
SB_31111| Best HMM Match : PAPA-1 (HMM E-Value=0.75)                   33   0.29 
SB_10659| Best HMM Match : PAPA-1 (HMM E-Value=0.75)                   33   0.29 
SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75)                    33   0.29 
SB_24531| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00083)         33   0.29 
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)                 33   0.29 
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        30   1.5  
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)                     30   1.5  
SB_50773| Best HMM Match : PAZ (HMM E-Value=2.8)                       29   2.7  
SB_12553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)                 29   4.7  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 29   4.7  
SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)                   28   8.2  

>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 520  VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSD 663
            V    + +CE  EN   +NL  C N   N+  +N  V   NVNM K++
Sbjct: 3409 VCENNVNVCENNENVCENNLNVCENNE-NVCENNVNVCKNNVNMCKNN 3455



 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 520  VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSD 663
            V    + +CE  EN   +NL  C N  +N+  +N+ V   N N+ +++
Sbjct: 3458 VCENNVNVCENNENVCENNLNVCEN-NLNVCENNENVCENNENVCENN 3504



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = +1

Query: 520  VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSDWEENDMSDN 690
            V    + +C+   N   +N+  C N  +N+  +N+ V   N+N+ +++    + ++N
Sbjct: 3437 VCENNVNVCKNNVNMCKNNVNVCEN-NVNVCENNENVCENNLNVCENNLNVCENNEN 3492


>SB_31111| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
          Length = 379

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
           KR H DW   N   +E    K N A +N LQ  T +  N   + +RV       LK+DW 
Sbjct: 197 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 256

Query: 670 E 672
           E
Sbjct: 257 E 257


>SB_10659| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
          Length = 498

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
           KR H DW   N   +E    K N A +N LQ  T +  N   + +RV       LK+DW 
Sbjct: 108 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 167

Query: 670 E 672
           E
Sbjct: 168 E 168


>SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
          Length = 403

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
           KR H DW   N   +E    K N A +N LQ  T +  N   + +RV       LK+DW 
Sbjct: 47  KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 106

Query: 670 E 672
           E
Sbjct: 107 E 107


>SB_24531| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00083)
          Length = 478

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
           KR H DW   N   +E    K N A +N LQ  T +  N   + +RV       LK+DW 
Sbjct: 336 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 395

Query: 670 E 672
           E
Sbjct: 396 E 396


>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
          Length = 1582

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 496  KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
            KR H DW   N   +E    K N A +N LQ  T +  N   + +RV       LK+DW 
Sbjct: 1076 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 1135

Query: 670  E 672
            E
Sbjct: 1136 E 1136


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 496  KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669
            KR H DW   N   +E    K N A +N LQ  T +  N   + +R        LK+DW 
Sbjct: 1160 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRALQQYTRKLKTDWW 1219

Query: 670  E 672
            E
Sbjct: 1220 E 1220


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/81 (23%), Positives = 34/81 (41%)
 Frame = +3

Query: 69   EGKCYDISLNYVKTKFSQMIQINEYKECEMEIETAIPLSAYLTNKHFENEDSVNIIVKYK 248
            +GKC  +     KTK      I +Y+  +M  +T +       NK F  E+++  + K K
Sbjct: 1261 QGKCDTLEKELFKTKEECSDWIMKYESIQMHNDTLVESLKSCENKIFAQEEAMQTLKKEK 1320

Query: 249  FITRKSTAICTKLFLKSRTKI 311
               +       K   KS+ ++
Sbjct: 1321 SSMKTDLDNTNKKLSKSKAEL 1341


>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
          Length = 1072

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 377 FKNNIKGSDDINEVFKYLKDNENQIFTI-YNIKCQQIFNGANVYMIGT 517
           F NNIK S   NE +   K+ +NQ+  + + + C    N     +IG+
Sbjct: 417 FANNIKTSTGFNETYDLTKELDNQLSRVGFTVSCYTAKNRITQRIIGS 464


>SB_50773| Best HMM Match : PAZ (HMM E-Value=2.8)
          Length = 195

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +3

Query: 126 IQINEYKECEMEIETAIPLSAYLTNKHFENEDSVNIIVKYKFITRKSTAICTKLFLKSRT 305
           + +  Y +      + +PL+AY  NKH + ++S   ++    ITR++TA    L   S T
Sbjct: 9   LPLTSYNKHHKADNSHLPLTAY--NKHHKTDNSHLPLLHTTSITRQTTATYRLLHTTSIT 66

Query: 306 KILTTIPTWF 335
           + +T    +F
Sbjct: 67  RQITATYRYF 76


>SB_12553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 228 NIIVKYKFITRKSTAICTKLFLKSRTKILTTIPTWFKWNVLSMR 359
           +++ K   +T +  ++ TK  + ++  +LT  P   KW+VL+ R
Sbjct: 73  SVLTKQLMLTMRPVSVLTKQPVLTKWSVLTKQPVVTKWSVLTKR 116


>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
          Length = 431

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 353 NAKTLMNLFKNNIKGSDDINEVFKYLKDNEN-QIFTIYNIKCQQIF 487
           N     N + NN K SD  +  +KY  +  N  IFT  ++  Q++F
Sbjct: 10  NTSNNENNYSNNNKDSDQDDNGYKYHSNRNNINIFTTEDVLLQKVF 55


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 301 RDFKNNFVQIAVDFLVINLYFTIILTLSSFSKCLLV-K*ALRGIA 170
           R   N  +  AV+F+ +++  T+++ L    KC++V K  LRG++
Sbjct: 679 RSSTNPDILFAVEFVFVHMIATVMMLLIFVPKCIIVRKMKLRGVS 723


>SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 377 FKNNIKGSDDINEVFKYLKDNENQIFTI-YNIKC 475
           F NNIK S   NE +   K+ +NQ+  + + + C
Sbjct: 437 FANNIKTSTGFNETYDLTKELDNQLSRVGFTVSC 470


>SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +1

Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSDWEENDMSDN 690
           V    + +CE  EN   +N +N  N  +N+ ++N  +   NVN+ +++  EN   +N
Sbjct: 22  VCENNVNVCENNENVCENN-ENVNN-NVNVCKNNVNMCKNNVNVCENN--ENVCENN 74


>SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)
          Length = 587

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 523 NSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASY 639
           N +RI L + K+N  Y   + C+N+   I  S      Y
Sbjct: 70  NDSRIRLYDLKDNSLYCKYKGCSNSSSQIKASFSHDGQY 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,338,279
Number of Sequences: 59808
Number of extensions: 389683
Number of successful extensions: 988
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -