BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120713.seq (691 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094 SB_31111| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 33 0.29 SB_10659| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 33 0.29 SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75) 33 0.29 SB_24531| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00083) 33 0.29 SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 33 0.29 SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88 SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 30 1.5 SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5) 30 1.5 SB_50773| Best HMM Match : PAZ (HMM E-Value=2.8) 29 2.7 SB_12553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22) 29 4.7 SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 29 4.7 SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2 SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06) 28 8.2 >SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3511 Score = 34.3 bits (75), Expect = 0.094 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSD 663 V + +CE EN +NL C N N+ +N V NVNM K++ Sbjct: 3409 VCENNVNVCENNENVCENNLNVCENNE-NVCENNVNVCKNNVNMCKNN 3455 Score = 31.5 bits (68), Expect = 0.67 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +1 Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSD 663 V + +CE EN +NL C N +N+ +N+ V N N+ +++ Sbjct: 3458 VCENNVNVCENNENVCENNLNVCEN-NLNVCENNENVCENNENVCENN 3504 Score = 28.3 bits (60), Expect = 6.2 Identities = 12/57 (21%), Positives = 29/57 (50%) Frame = +1 Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSDWEENDMSDN 690 V + +C+ N +N+ C N +N+ +N+ V N+N+ +++ + ++N Sbjct: 3437 VCENNVNVCKNNVNMCKNNVNVCEN-NVNVCENNENVCENNLNVCENNLNVCENNEN 3492 >SB_31111| Best HMM Match : PAPA-1 (HMM E-Value=0.75) Length = 379 Score = 32.7 bits (71), Expect = 0.29 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +1 Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669 KR H DW N +E K N A +N LQ T + N + +RV LK+DW Sbjct: 197 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 256 Query: 670 E 672 E Sbjct: 257 E 257 >SB_10659| Best HMM Match : PAPA-1 (HMM E-Value=0.75) Length = 498 Score = 32.7 bits (71), Expect = 0.29 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +1 Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669 KR H DW N +E K N A +N LQ T + N + +RV LK+DW Sbjct: 108 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 167 Query: 670 E 672 E Sbjct: 168 E 168 >SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75) Length = 403 Score = 32.7 bits (71), Expect = 0.29 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +1 Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669 KR H DW N +E K N A +N LQ T + N + +RV LK+DW Sbjct: 47 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 106 Query: 670 E 672 E Sbjct: 107 E 107 >SB_24531| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00083) Length = 478 Score = 32.7 bits (71), Expect = 0.29 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +1 Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669 KR H DW N +E K N A +N LQ T + N + +RV LK+DW Sbjct: 336 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 395 Query: 670 E 672 E Sbjct: 396 E 396 >SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) Length = 1582 Score = 32.7 bits (71), Expect = 0.29 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +1 Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669 KR H DW N +E K N A +N LQ T + N + +RV LK+DW Sbjct: 1076 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWW 1135 Query: 670 E 672 E Sbjct: 1136 E 1136 >SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1853 Score = 31.1 bits (67), Expect = 0.88 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Frame = +1 Query: 496 KRVH-DWNVVNSTRIELCEAKENEAYSN-LQNCTNARINISRSNKRVASYNVNMLKSDWE 669 KR H DW N +E K N A +N LQ T + N + +R LK+DW Sbjct: 1160 KRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRALQQYTRKLKTDWW 1219 Query: 670 E 672 E Sbjct: 1220 E 1220 >SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) Length = 2122 Score = 30.3 bits (65), Expect = 1.5 Identities = 19/81 (23%), Positives = 34/81 (41%) Frame = +3 Query: 69 EGKCYDISLNYVKTKFSQMIQINEYKECEMEIETAIPLSAYLTNKHFENEDSVNIIVKYK 248 +GKC + KTK I +Y+ +M +T + NK F E+++ + K K Sbjct: 1261 QGKCDTLEKELFKTKEECSDWIMKYESIQMHNDTLVESLKSCENKIFAQEEAMQTLKKEK 1320 Query: 249 FITRKSTAICTKLFLKSRTKI 311 + K KS+ ++ Sbjct: 1321 SSMKTDLDNTNKKLSKSKAEL 1341 >SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5) Length = 1072 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +2 Query: 377 FKNNIKGSDDINEVFKYLKDNENQIFTI-YNIKCQQIFNGANVYMIGT 517 F NNIK S NE + K+ +NQ+ + + + C N +IG+ Sbjct: 417 FANNIKTSTGFNETYDLTKELDNQLSRVGFTVSCYTAKNRITQRIIGS 464 >SB_50773| Best HMM Match : PAZ (HMM E-Value=2.8) Length = 195 Score = 29.5 bits (63), Expect = 2.7 Identities = 19/70 (27%), Positives = 35/70 (50%) Frame = +3 Query: 126 IQINEYKECEMEIETAIPLSAYLTNKHFENEDSVNIIVKYKFITRKSTAICTKLFLKSRT 305 + + Y + + +PL+AY NKH + ++S ++ ITR++TA L S T Sbjct: 9 LPLTSYNKHHKADNSHLPLTAY--NKHHKTDNSHLPLLHTTSITRQTTATYRLLHTTSIT 66 Query: 306 KILTTIPTWF 335 + +T +F Sbjct: 67 RQITATYRYF 76 >SB_12553| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 227 Score = 29.1 bits (62), Expect = 3.6 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +3 Query: 228 NIIVKYKFITRKSTAICTKLFLKSRTKILTTIPTWFKWNVLSMR 359 +++ K +T + ++ TK + ++ +LT P KW+VL+ R Sbjct: 73 SVLTKQLMLTMRPVSVLTKQPVLTKWSVLTKQPVVTKWSVLTKR 116 >SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22) Length = 431 Score = 28.7 bits (61), Expect = 4.7 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +2 Query: 353 NAKTLMNLFKNNIKGSDDINEVFKYLKDNEN-QIFTIYNIKCQQIF 487 N N + NN K SD + +KY + N IFT ++ Q++F Sbjct: 10 NTSNNENNYSNNNKDSDQDDNGYKYHSNRNNINIFTTEDVLLQKVF 55 >SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) Length = 1514 Score = 28.7 bits (61), Expect = 4.7 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -1 Query: 301 RDFKNNFVQIAVDFLVINLYFTIILTLSSFSKCLLV-K*ALRGIA 170 R N + AV+F+ +++ T+++ L KC++V K LRG++ Sbjct: 679 RSSTNPDILFAVEFVFVHMIATVMMLLIFVPKCIIVRKMKLRGVS 723 >SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 789 Score = 28.3 bits (60), Expect = 6.2 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +2 Query: 377 FKNNIKGSDDINEVFKYLKDNENQIFTI-YNIKC 475 F NNIK S NE + K+ +NQ+ + + + C Sbjct: 437 FANNIKTSTGFNETYDLTKELDNQLSRVGFTVSC 470 >SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 142 Score = 27.9 bits (59), Expect = 8.2 Identities = 16/57 (28%), Positives = 30/57 (52%) Frame = +1 Query: 520 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSDWEENDMSDN 690 V + +CE EN +N +N N +N+ ++N + NVN+ +++ EN +N Sbjct: 22 VCENNVNVCENNENVCENN-ENVNN-NVNVCKNNVNMCKNNVNVCENN--ENVCENN 74 >SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06) Length = 587 Score = 27.9 bits (59), Expect = 8.2 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = +1 Query: 523 NSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASY 639 N +RI L + K+N Y + C+N+ I S Y Sbjct: 70 NDSRIRLYDLKDNSLYCKYKGCSNSSSQIKASFSHDGQY 108 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,338,279 Number of Sequences: 59808 Number of extensions: 389683 Number of successful extensions: 988 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 930 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 984 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1793485733 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -