Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120713.seq
         (691 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB085628-1|BAC11010.1| 1069|Homo sapiens telomerase reverse tran...    31   3.9  
D38553-1|BAA07556.1|  747|Homo sapiens HCAP-H protein.                 30   8.9  
BC024211-1|AAH24211.1|  741|Homo sapiens non-SMC condensin I com...    30   8.9  
BC015021-1|AAH15021.1|  237|Homo sapiens RAB23, member RAS oncog...    30   8.9  
AY585189-1|AAT79492.1|  237|Homo sapiens RAB family small GTP bi...    30   8.9  
AL031321-1|CAI21564.1|  237|Homo sapiens RAB23, member RAS oncog...    30   8.9  
AF498951-1|AAM21099.1|  237|Homo sapiens small GTP binding prote...    30   8.9  
AB034244-1|BAA87324.1|  237|Homo sapiens RAB23 protein protein.        30   8.9  
AB025427-1|BAB40309.1|  237|Homo sapiens hRAB-23 protein protein.      30   8.9  

>AB085628-1|BAC11010.1| 1069|Homo sapiens telomerase reverse
            transcriptase protein.
          Length = 1069

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 353  NAKTLMNLFKNNIKGSDDINEVFKYLKDNENQIFTIYNIKCQQIFNGANVYMIGTWST 526
            +AKT ++  + +I+ S   N  FK  ++   ++F +  +KC  +F    V  + T  T
Sbjct: 879  HAKTFLSYARTSIRASLTFNRGFKAGRNMRRKLFGVLRLKCHSLFLDLQVNSLQTVCT 936


>D38553-1|BAA07556.1|  747|Homo sapiens HCAP-H protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 195 TNKHFENEDSVNIIVKYKFITRKSTAICTKLFLKSRTKILTTIPTWFKWNV 347
           T K FE +   +I     F   K+  I TK  L+++    TT+PT F +NV
Sbjct: 472 TKKDFEIDFEDDIDFDVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNV 522


>BC024211-1|AAH24211.1|  741|Homo sapiens non-SMC condensin I
           complex, subunit H protein.
          Length = 741

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 195 TNKHFENEDSVNIIVKYKFITRKSTAICTKLFLKSRTKILTTIPTWFKWNV 347
           T K FE +   +I     F   K+  I TK  L+++    TT+PT F +NV
Sbjct: 466 TKKDFEIDFEDDIDFDVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNV 516


>BC015021-1|AAH15021.1|  237|Homo sapiens RAB23, member RAS oncogene
           family protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 DDSDVVQVECFVNAKTL-MNLFKNNIKGSDDINEVFKYLKD 436
           DDS +   E    AK L +  ++ ++K   ++NEVFKYL +
Sbjct: 127 DDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAE 167


>AY585189-1|AAT79492.1|  237|Homo sapiens RAB family small GTP
           binding protein RAB 23 protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 DDSDVVQVECFVNAKTL-MNLFKNNIKGSDDINEVFKYLKD 436
           DDS +   E    AK L +  ++ ++K   ++NEVFKYL +
Sbjct: 127 DDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAE 167


>AL031321-1|CAI21564.1|  237|Homo sapiens RAB23, member RAS oncogene
           family protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 DDSDVVQVECFVNAKTL-MNLFKNNIKGSDDINEVFKYLKD 436
           DDS +   E    AK L +  ++ ++K   ++NEVFKYL +
Sbjct: 127 DDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAE 167


>AF498951-1|AAM21099.1|  237|Homo sapiens small GTP binding protein
           RAB23 protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 DDSDVVQVECFVNAKTL-MNLFKNNIKGSDDINEVFKYLKD 436
           DDS +   E    AK L +  ++ ++K   ++NEVFKYL +
Sbjct: 127 DDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAE 167


>AB034244-1|BAA87324.1|  237|Homo sapiens RAB23 protein protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 DDSDVVQVECFVNAKTL-MNLFKNNIKGSDDINEVFKYLKD 436
           DDS +   E    AK L +  ++ ++K   ++NEVFKYL +
Sbjct: 127 DDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAE 167


>AB025427-1|BAB40309.1|  237|Homo sapiens hRAB-23 protein protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 DDSDVVQVECFVNAKTL-MNLFKNNIKGSDDINEVFKYLKD 436
           DDS +   E    AK L +  ++ ++K   ++NEVFKYL +
Sbjct: 127 DDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAE 167


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,539,545
Number of Sequences: 237096
Number of extensions: 1574160
Number of successful extensions: 3337
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3337
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)