Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120713.seq
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical ... 30 1.4
Z80215-9|CAB02276.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.4
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 2.4
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 2.4
DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin p... 28 5.5
AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin p... 28 5.5
Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical pr... 28 7.2
U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical p... 28 7.2
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL110490-1|CAB54439.1| 674|Caenorhabditis elegans Hypothetical ... 28 7.2
AC006674-4|AAF39940.1| 402|Caenorhabditis elegans Hypothetical ... 27 9.6
>AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical
protein F14D2.6 protein.
Length = 998
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 490 WSKRVHDWNVVNSTRIE---LCEAKENEAYSNLQNCTNARINISRSNK 624
WS+ W+++N+T+++ +C E + Y++ N ++ + S K
Sbjct: 148 WSQETSKWDIINNTKLDVGIVCRVAERDIYADFNAYGNRKVVAADSYK 195
>Z80215-9|CAB02276.1| 327|Caenorhabditis elegans Hypothetical
protein C36B1.11 protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 460 LQYKMSTNFQWSKRVHDWNVVNSTRIELCEAKEN--EAYSNLQNCTNARINISRSNKRVA 633
L+ K STN +++ + + + S R E+C +E+ +A S + + + RI + K +A
Sbjct: 252 LKNKSSTNEGYTESMTETVITISRRFEMCIRRESPEDAVSRIADYLDDRIESNDQKKAIA 311
Query: 634 SYNVNMLKSDW 666
Y W
Sbjct: 312 EYMERNYSIKW 322
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 90 SLNYVKTKFSQMIQINEYKECEMEIETAIPLSAYLTNKHFENEDSVNIIVKYKFITRKST 269
+++ V+ ++ + +E ++IE + L +HF +ED + Y +TR+S
Sbjct: 991 TISSVQRNNEEVPSAKQGEEVCIKIENTTGEAPRLYGRHFTHEDPL-----YSRVTRESI 1045
Query: 270 AICTKLFLKSRTK 308
IC K F + TK
Sbjct: 1046 DICKKYFREDLTK 1058
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 90 SLNYVKTKFSQMIQINEYKECEMEIETAIPLSAYLTNKHFENEDSVNIIVKYKFITRKST 269
+++ V+ ++ + +E ++IE + L +HF +ED + Y +TR+S
Sbjct: 1090 TISSVQRNNEEVPSAKQGEEVCIKIENTTGEAPRLYGRHFTHEDPL-----YSRVTRESI 1144
Query: 270 AICTKLFLKSRTK 308
IC K F + TK
Sbjct: 1145 DICKKYFREDLTK 1157
>DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin
proteoglycan-4 protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 281 KIVFEVAYKNFNDDSDVVQVECFVNAKTLMNLFKN 385
K+ F K +D++ VVQ EC +T NLF N
Sbjct: 204 KLAFNATIKCIDDEAGVVQSECDTQCQT-KNLFMN 237
>AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin
proteoglycan protein 4 protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 281 KIVFEVAYKNFNDDSDVVQVECFVNAKTLMNLFKN 385
K+ F K +D++ VVQ EC +T NLF N
Sbjct: 204 KLAFNATIKCIDDEAGVVQSECDTQCQT-KNLFMN 237
>Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical
protein F58B3.4 protein.
Length = 601
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 132 INEYKECEMEIETAIPLSAYLTNK 203
+ EYKE EM+ ET + YL NK
Sbjct: 268 VEEYKEDEMDDETRTAVREYLVNK 291
>U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical
protein K11G12.6a protein.
Length = 503
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 285 LFLKSRTKILTTIPTWFKWNVLSMRKH 365
+F+ TK+L+ PTW WN+ ++ H
Sbjct: 43 VFMNGATKLLSKCPTW--WNLTALNYH 67
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 285 LFLKSRTKILTTIPTWFKWNVLSMRKH 365
+F+ TK+L+ PTW WN+ ++ H
Sbjct: 306 VFMNGATKLLSKCPTW--WNLTALNYH 330
>AL110490-1|CAB54439.1| 674|Caenorhabditis elegans Hypothetical
protein Y48B6A.1 protein.
Length = 674
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 12 SDNKIQEYYGDSQSFKDMEEGKCYDISLNYVKTKFSQMIQINEY 143
S N +EY D + K EE + D LN++ +K+ + ++ +Y
Sbjct: 244 SYNPPEEYIFDDEERKKWEEAEKEDRVLNFMPSKYDALRKVPQY 287
>AC006674-4|AAF39940.1| 402|Caenorhabditis elegans Hypothetical
protein K12H6.11 protein.
Length = 402
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 541 LCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSDWEEN 675
LCEA + EA L+N + SR S ++ K D +EN
Sbjct: 356 LCEACKKEAVKKLENAVKRILKNSRDPSEPPSKKKSVKKLDGKEN 400
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,087
Number of Sequences: 27780
Number of extensions: 311023
Number of successful extensions: 951
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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