Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120713.seq
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18570.1 68414.m02316 myb family transcription factor (MYB51)... 30 1.7
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 29 2.2
At1g17830.1 68414.m02207 expressed protein 29 2.2
At4g32790.1 68417.m04665 exostosin family protein contains Pfam ... 28 5.1
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 28 6.7
At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr... 27 8.9
At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containi... 27 8.9
At3g14200.1 68416.m01794 DNAJ heat shock N-terminal domain-conta... 27 8.9
At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein c... 27 8.9
>At1g18570.1 68414.m02316 myb family transcription factor (MYB51)
contains PFAM profile: PF00249
Length = 352
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 317 DDSDVVQVECFVNAKTLMNLFKNNIKGSDDINEVFKYLKDNENQIFTIYNI-KCQQIFNG 493
DD D + F+N + M L ++ ++ + + E+ ++L ++EN + + + + Q +F+
Sbjct: 287 DDEDTIGFSTFLNDEDFMMLEESCVENTAFMKELTRFLHEDENDVVDVTPVYERQDLFDE 346
Query: 494 ANVY 505
+ Y
Sbjct: 347 IDNY 350
>At4g30990.1 68417.m04398 expressed protein ; expression supported by
MPSS
Length = 2138
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +2
Query: 257 KKINSNLYKIVFEVAYKNFNDDSDVVQVECFVNAKTLMNLFKNNIKGSDDINEVFKYLKD 436
++I + L KIVF K N DSD V V V A ++ L ++ S+ + V K
Sbjct: 1564 EEIRTCLQKIVFPRMQKLMNSDSDNVNVNSSVAALKVLKLLPEDVLDSNLSSIVHKIASF 1623
Query: 437 NENQI 451
+N++
Sbjct: 1624 LKNRL 1628
>At1g17830.1 68414.m02207 expressed protein
Length = 337
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 344 CFVNAKTLMNLFKNN-IKGSDDINEVFK 424
CF++ TL + F+ N I+G D+INE K
Sbjct: 236 CFLSYHTLSSAFQGNLIEGDDEINETMK 263
>At4g32790.1 68417.m04665 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 593
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 469 KMSTNFQWSKRVHDWNVV--NSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYN 642
K S+N + K V D ++ N ++E+ E+K + + NL + +N+S S +
Sbjct: 141 KSSSNESYEKIVEDADIAFENIRKMEILESKSDPSVDNLSSEVKKFMNVSNSGVVSITEM 200
Query: 643 VNML 654
+N+L
Sbjct: 201 MNLL 204
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 353 NAKTLMNLFKNNIKGSDDINEVFKYLKDNENQIFTIYNIKCQQ 481
NA+ + + NN S +NE F+ LK I TI +I Q
Sbjct: 1273 NARESVQAYVNNQPPSTKVNESFRALKSINGNINTILSITSDQ 1315
>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP
protein (AALP) identical to AALP protein GI:7230640 from
[Arabidopsis thaliana]; similar to barley aleurain
Length = 358
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 421 KHLIDVVRPLYIVFE*IHQCFRIDKT 344
KH + +VRP+ I FE IH FR+ K+
Sbjct: 264 KHAVGLVRPVSIAFEVIHS-FRLYKS 288
>At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 668
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 356 AKTLMNLFKNNIKGSDDINEVFKYLKDNENQI 451
A+ L++L N I+ + D+ E+F +K NE+ +
Sbjct: 629 AQDLLSLCPNYIRNNPDVLELFNTMKPNESAV 660
>At3g14200.1 68416.m01794 DNAJ heat shock N-terminal
domain-containing protein low similarity to
SP|O75190|DJB6_HUMAN DnaJ homolog subfamily B member 6
(Heat shock protein J2) {Homo sapiens}; contains Pfam
profile PF00226 DnaJ domain
Length = 230
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 242 VQIYYKKINSNLYKIVFEVAYKNFNDDSDVVQVECFVNAKTLMNLFKNNIKGSD-DINEV 418
+Q Y ++ + + +++V N +DD D + F+N M N K SD + +
Sbjct: 60 IQEAYSVLSDSNKRFLYDVGAYNTDDDDDQNGMGDFLNEMATM---MNQSKPSDNNTGDS 116
Query: 419 FKYLKDNENQIF 454
F+ L+D N++F
Sbjct: 117 FEQLQDLFNEMF 128
>At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein
contains Pfam profiles PF02446:
4-alpha-glucanotransferase, PF00686: Starch binding
domain; contains a non-consensus AT-AC intron between at
intron 5
Length = 955
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 416 VFKYLKDNENQIFTIYNIKCQQIFNGANVYMIGT 517
VF D ++ + + I C I G +VY++GT
Sbjct: 152 VFMNKSDQDDSVVVQFKICCPDIGEGTSVYVLGT 185
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,369
Number of Sequences: 28952
Number of extensions: 265021
Number of successful extensions: 696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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