Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120712.seq
(691 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB70D1 Cluster: PREDICTED: similar to Karyopheri... 79 2e-22
UniRef50_O60518 Cluster: Ran-binding protein 6; n=68; Eumetazoa|... 80 4e-14
UniRef50_Q5C159 Cluster: SJCHGC08761 protein; n=1; Schistosoma j... 75 2e-12
UniRef50_Q5T576 Cluster: RAN binding protein 5; n=9; Euteleostom... 73 5e-12
UniRef50_A7PW36 Cluster: Chromosome chr8 scaffold_34, whole geno... 47 4e-04
UniRef50_Q9N5V3 Cluster: Importin beta family protein 3; n=2; Ca... 47 4e-04
UniRef50_UPI0000DA3D66 Cluster: PREDICTED: similar to RAN bindin... 46 7e-04
UniRef50_Q2UN71 Cluster: Karyopherin; n=14; Pezizomycotina|Rep: ... 45 0.002
UniRef50_A6R7C2 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_O74476 Cluster: Importin beta-3 subunit; n=1; Schizosac... 44 0.003
UniRef50_A4QRM7 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_Q00SR0 Cluster: Karyopherin (Importin) beta 3; n=2; Ost... 38 0.18
UniRef50_Q4Q561 Cluster: Putative uncharacterized protein; n=3; ... 38 0.31
UniRef50_A7R7P4 Cluster: Chromosome undetermined scaffold_1922, ... 37 0.53
UniRef50_A2FDC7 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_Q00WP4 Cluster: Karyopherin (Importin) beta 3; n=1; Ost... 33 5.0
UniRef50_Q22UQ4 Cluster: Putative uncharacterized protein; n=1; ... 33 5.0
UniRef50_A7PYL2 Cluster: Chromosome chr12 scaffold_38, whole gen... 33 6.6
UniRef50_A5AVQ9 Cluster: Putative uncharacterized protein; n=2; ... 33 6.6
UniRef50_Q6C1P3 Cluster: Similar to sp|P32337 Saccharomyces cere... 33 6.6
UniRef50_Q11QW5 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
UniRef50_A0CES7 Cluster: Chromosome undetermined scaffold_172, w... 33 8.7
>UniRef50_UPI0000DB70D1 Cluster: PREDICTED: similar to Karyopherin
3 CG1059-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Karyopherin 3 CG1059-PA - Apis mellifera
Length = 1040
Score = 78.6 bits (185), Expect(2) = 2e-22
Identities = 36/78 (46%), Positives = 53/78 (67%)
Frame = +3
Query: 219 PEIAI*AADSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFT 398
P+I A +EQ+LL++Q + ++ +R KVC+V + +ARN ID+DGNN WPEFL F+F
Sbjct: 93 PKIPPEAQAQLKEQILLSVQNEQTETIRRKVCEVAAEVARNLIDEDGNNQWPEFLQFLFQ 152
Query: 399 XASXQDPNIKEAGIXMFT 452
A+ P +KE + MFT
Sbjct: 153 CANSPVPALKENALRMFT 170
Score = 69.3 bits (162), Expect = 8e-11
Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 17/80 (21%)
Frame = +1
Query: 13 QFYQLLNTLLSTDNDIRSQAE-----------------DAYNNIPTETKVVHLVXSIQNA 141
QF QLLNTLLSTDND R+QAE DAYNN+P ++KV L+ S+ NA
Sbjct: 7 QFQQLLNTLLSTDNDARTQAEVQHVANMLSEFACGHHSDAYNNLPVDSKVTFLLTSLCNA 66
Query: 142 DIAEDVRQTAAVLLRXLFSA 201
+ E++R AAVLLR LFS+
Sbjct: 67 TLTEEMRAMAAVLLRRLFSS 86
Score = 50.4 bits (115), Expect(2) = 2e-22
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +3
Query: 558 RAVXAVGAXILLHDKEPIIQKHFSDVLXPLMQAIVLSIEAADXD 689
+AV A+GA I+LHDKE IQKHFS++L ++Q I S+E D
Sbjct: 172 QAVRAIGAFIILHDKEENIQKHFSELLPAIVQVIAQSVEKQGDD 215
>UniRef50_O60518 Cluster: Ran-binding protein 6; n=68;
Eumetazoa|Rep: Ran-binding protein 6 - Homo sapiens
(Human)
Length = 1105
Score = 80.2 bits (189), Expect = 4e-14
Identities = 40/149 (26%), Positives = 74/149 (49%)
Frame = +3
Query: 213 VLPEIAI*AADSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFM 392
V P + + +L+L ++++ +R K+CD+ + LARN ID+DG N WPE L F+
Sbjct: 85 VYPNLPADVQRDVKIELILAVKLETHASMRKKLCDIFAVLARNLIDEDGTNHWPEGLKFL 144
Query: 393 FTXASXQDPNIKEAGIXMFTSVPGVFGNRQTENLXVIKGCXYLLCSXMNQWLCELRAVXA 572
++ + E + +F PG+FG ++ +L +IK + A
Sbjct: 145 IDSIYSKNVVLWEVALHVFWHFPGIFGTQERHDLDIIKRLLDQCIQDQEHPAIRTLSARA 204
Query: 573 VGAXILLHDKEPIIQKHFSDVLXPLMQAI 659
A +L ++ + K F+D+L ++QA+
Sbjct: 205 AAAFVLANENNIALFKDFADLLPGILQAV 233
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +1
Query: 13 QFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVXSIQNADIAEDVRQTAAVLLRXL 192
+FYQLL L++ +R QAE+ Y NIP K L+ +++N +VRQ AA LLR L
Sbjct: 18 EFYQLLKNLINPSCMVRRQAEEIYENIPGLCKTTFLLDAVRNRRAGYEVRQMAAALLRRL 77
Query: 193 FSA 201
S+
Sbjct: 78 LSS 80
>UniRef50_Q5C159 Cluster: SJCHGC08761 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08761 protein - Schistosoma
japonicum (Blood fluke)
Length = 183
Score = 74.9 bits (176), Expect = 2e-12
Identities = 32/83 (38%), Positives = 52/83 (62%)
Frame = +3
Query: 243 DSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPN 422
+SA++QL+L + + Q +R KV D++S L R DDDGN+ WPEF + ++ D
Sbjct: 101 NSAKQQLVLIVVHENEQLMRRKVADLISELVRMEFDDDGNSRWPEFTPILLDWSTSPDSG 160
Query: 423 IKEAGIXMFTSVPGVFGNRQTEN 491
++E +F SVP +FGN+Q ++
Sbjct: 161 LREIACHIFGSVPSLFGNQQAQS 183
>UniRef50_Q5T576 Cluster: RAN binding protein 5; n=9;
Euteleostomi|Rep: RAN binding protein 5 - Homo sapiens
(Human)
Length = 126
Score = 73.3 bits (172), Expect = 5e-12
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +3
Query: 213 VLPEIAI*AADSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFM 392
V P + + + +LL+ +QM+ +R KVCD+ + LARN ID+DGNN WPE L F+
Sbjct: 48 VYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDEDGNNQWPEGLKFL 107
Query: 393 FTXASXQDPNIKEAGIXMF 449
F S Q+ ++EA + +F
Sbjct: 108 FDSVSSQNVGLREAALHIF 126
Score = 31.1 bits (67), Expect(2) = 2.9
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 7 EAQFYQLLNTLLSTDNDIRSQAE 75
+ QFY LL LLS DN +R QAE
Sbjct: 6 QQQFYLLLGNLLSPDNVVRKQAE 28
Score = 22.2 bits (45), Expect(2) = 2.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 154 DVRQTAAVLLRXLFSAXXXXXXXXXXXXQQTVLRN 258
+ RQ AAVLLR L S+ QT +++
Sbjct: 28 EARQMAAVLLRRLLSSAFDEVYPALPSDVQTAIKS 62
>UniRef50_A7PW36 Cluster: Chromosome chr8 scaffold_34, whole genome
shotgun sequence; n=15; Magnoliophyta|Rep: Chromosome
chr8 scaffold_34, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1116
Score = 47.2 bits (107), Expect = 4e-04
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Frame = +3
Query: 261 LLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPNIKEAGI 440
LL +Q + ++ + K+CD VS LA + D G WPE L FMF + + ++EA +
Sbjct: 108 LLDCVQRETAKTISKKLCDTVSELASGILPDGG---WPELLPFMFQCVTSSNFKLQEAAL 164
Query: 441 XMFTSVPGVFGNRQTENLXVIKGC-XYLLCSXMNQWLCELRAVXAVGAXILLHD--KEPI 611
+F + G +L + L S MN ++R + A+GA I
Sbjct: 165 LIFAQLSQYIGETLLPHLDTLHSVFLQSLASSMNS---DVR-IAALGAAINFIQCLSNAA 220
Query: 612 IQKHFSDVLXPLMQAIVLSIEAA 680
+ F D+L +MQ + ++ ++
Sbjct: 221 ERDKFQDLLPLMMQTLTEALNSS 243
>UniRef50_Q9N5V3 Cluster: Importin beta family protein 3; n=2;
Caenorhabditis|Rep: Importin beta family protein 3 -
Caenorhabditis elegans
Length = 1092
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +1
Query: 13 QFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVXSIQNADIAEDVRQTAAVLLRXL 192
QF +L+ L S DNDIR QAE+ Y I TKV L + + D R T V LR +
Sbjct: 5 QFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFLRRV 64
Query: 193 FS 198
+
Sbjct: 65 LA 66
>UniRef50_UPI0000DA3D66 Cluster: PREDICTED: similar to RAN binding
protein 5; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to RAN binding protein 5 - Rattus norvegicus
Length = 1056
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +1
Query: 73 EDAYNNIPTETKVVHLVXSIQNADIAEDVRQTAAVLLRXLFSAXXXXXXXXXXXXQQTVL 252
E+ Y NIP +K+ L+ +I+N AE+ RQ AAVLLR L S+ QT +
Sbjct: 154 EETYENIPGRSKITFLLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYPALPSDVQTAI 213
Query: 253 RN 258
++
Sbjct: 214 KS 215
Score = 35.1 bits (77), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 213 VLPEIAI*AADSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHI 347
V P + + + +LL+ +QM+ +R K+CD+ + LARN I
Sbjct: 201 VYPALPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLI 245
>UniRef50_Q2UN71 Cluster: Karyopherin; n=14; Pezizomycotina|Rep:
Karyopherin - Aspergillus oryzae
Length = 1095
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/72 (27%), Positives = 40/72 (55%)
Frame = +3
Query: 252 QEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPNIKE 431
+++L+ L + +R K+ D V+ +AR + D+ + WPE L +F + D ++E
Sbjct: 102 RQKLVTCLTTETVTDVRKKIGDAVAEIARQYTDN--GDQWPELLGVLFQASQSPDAGLRE 159
Query: 432 AGIXMFTSVPGV 467
A +F++ PG+
Sbjct: 160 AAFRIFSTTPGI 171
>UniRef50_A6R7C2 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 1091
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/83 (26%), Positives = 45/83 (54%)
Frame = +3
Query: 252 QEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPNIKE 431
+E+LL +L + ++R K+ D V+ +A + D+ W E L +F + DP +++
Sbjct: 102 REKLLESLGSESLAHVRNKIGDAVAEIAGQYADN--GEQWSELLGVLFQASQSTDPGMRD 159
Query: 432 AGIXMFTSVPGVFGNRQTENLXV 500
+ +F++ PG+ +Q E + V
Sbjct: 160 SAFRIFSTTPGII-EKQHEEMVV 181
>UniRef50_O74476 Cluster: Importin beta-3 subunit; n=1;
Schizosaccharomyces pombe|Rep: Importin beta-3 subunit -
Schizosaccharomyces pombe (Fission yeast)
Length = 1095
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +3
Query: 213 VLPEIAI*AADSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFM 392
V I+ + S Q QLL + +R K+CD ++ +AR+ D G WPE + +
Sbjct: 87 VFSSISNESKQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQGE--WPELINVI 144
Query: 393 FTXASXQDPNIKEAGIXMFTSVPGVFGNRQT 485
F + D + +E+ TS+P + + +
Sbjct: 145 FNAVNSPDESFRESVFRTITSLPRLLSGQDS 175
>UniRef50_A4QRM7 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1144
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/85 (27%), Positives = 45/85 (52%)
Frame = +3
Query: 240 ADSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDP 419
A+ +++LL TL + + +R K+ D V+ +AR D+G + WP+ L +F + D
Sbjct: 98 AEVIRQKLLQTLASESDRGVRNKISDAVAEVARQ-CSDNGVS-WPDLLAALFQLSMAPDA 155
Query: 420 NIKEAGIXMFTSVPGVFGNRQTENL 494
+E +F + PG+ + E++
Sbjct: 156 GKREISFRVFATTPGIIEKQHEESV 180
Score = 34.3 bits (75), Expect = 2.9
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 10 AQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETK----VVHLVXSIQNADIAEDVRQTAAV 177
A+ QLL L S DN +RSQAED N T T+ ++ LV I +R ++AV
Sbjct: 10 AELGQLLEALQSPDNAVRSQAEDHLQNNWTVTRPEVLLMGLVELIGAQANTTTIRSSSAV 69
Query: 178 LLRXL 192
+ R +
Sbjct: 70 IFRRI 74
>UniRef50_Q00SR0 Cluster: Karyopherin (Importin) beta 3; n=2;
Ostreococcus|Rep: Karyopherin (Importin) beta 3 -
Ostreococcus tauri
Length = 1517
Score = 38.3 bits (85), Expect = 0.18
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +3
Query: 243 DSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPN 422
+ + +LL L+ + + + K CD++ +A + D WPE + FMF+ S
Sbjct: 806 ERVKRELLNALREEPERKISRKTCDLICEVAAGGSERD--EPWPELMPFMFSAVSEGGEG 863
Query: 423 IKEAGIXMF 449
+KE+ + +F
Sbjct: 864 LKESALNVF 872
>UniRef50_Q4Q561 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1082
Score = 37.5 bits (83), Expect = 0.31
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 25 LLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVXSIQNADIAED--VRQTAAVLLRXLFS 198
LLN L S DN R AE+ YN + + V + + + ++D VR + VLLR LF+
Sbjct: 9 LLNGLRSADNQERKSAEEHYNGMVASSPVWMMCALAETSATSQDTSVRTMSLVLLRKLFN 68
Query: 199 A 201
A
Sbjct: 69 A 69
>UniRef50_A7R7P4 Cluster: Chromosome undetermined scaffold_1922, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_1922, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 1180
Score = 36.7 bits (81), Expect = 0.53
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +3
Query: 246 SAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPNI 425
S + LL +Q ++ + K+CD VS LA + + ++G WP L FMF + +
Sbjct: 840 SLKSILLGCIQRKNAKSISKKLCDTVSELASSILLENG---WPNLLSFMFQCMTFDSTKL 896
Query: 426 KEAGIXMFTSV 458
+EA +F +
Sbjct: 897 QEAVFLIFAQL 907
>UniRef50_A2FDC7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1006
Score = 35.1 bits (77), Expect = 1.6
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +1
Query: 28 LNTLLSTDNDIRSQAEDAYN----NIPTETKVVHLVXSIQNADIAEDVRQTAAVLLRXL 192
L STDN+ RSQAE +N N P E+ +V L+ IQ+++ E ++ T AVLL +
Sbjct: 11 LTACYSTDNEQRSQAEAQFNQIFQNFPQES-IVELLNLIQSSN--ERLKNTGAVLLHRM 66
>UniRef50_Q00WP4 Cluster: Karyopherin (Importin) beta 3; n=1;
Ostreococcus tauri|Rep: Karyopherin (Importin) beta 3 -
Ostreococcus tauri
Length = 1024
Score = 33.5 bits (73), Expect = 5.0
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +3
Query: 300 RXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPNIKEAGIXMFTSVPGVFGNR 479
R + DV++ +AR + N WPE L FM A+ + + +F S+ +
Sbjct: 45 RNALLDVIAKIARWCVP---TNEWPELLEFMGQCANSPETAHRALAFRLFESLTETIASA 101
Query: 480 QTENLXVIKGCXYLLCSXMNQWLCELR--AVXAVGAXILLHDKEP 608
+E+ + G L + + E+R A+ AVGA + EP
Sbjct: 102 LSEHFGTLAG---LFANALRDECDEVRTSALRAVGALVANSSGEP 143
>UniRef50_Q22UQ4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1113
Score = 33.5 bits (73), Expect = 5.0
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 297 LRXKVCDVVSXLARNHIDD-DGNNXWPEFLXFMFTXASXQDPNIKEAGIXMFTSV 458
+R +CD + L + ++D D N WPE + +++ + + E+G + T++
Sbjct: 153 VRGLICDCIGELGGSLLEDKDAGNQWPELISIVWSLFMKESVELLESGFKILTNL 207
>UniRef50_A7PYL2 Cluster: Chromosome chr12 scaffold_38, whole genome
shotgun sequence; n=9; Magnoliophyta|Rep: Chromosome
chr12 scaffold_38, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1048
Score = 33.1 bits (72), Expect = 6.6
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 25 LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVXSIQNADIAEDVRQTAAVLLR 186
LL L DND R QAE+ + + +V+ L+ ++ A +VRQ +AVLLR
Sbjct: 8 LLIQFLMPDNDARRQAEEQIKRLAKDPQVIPALIHHLRTAK-TPNVRQLSAVLLR 61
>UniRef50_A5AVQ9 Cluster: Putative uncharacterized protein; n=2;
Magnoliophyta|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 1028
Score = 33.1 bits (72), Expect = 6.6
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 25 LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVXSIQNADIAEDVRQTAAVLLR 186
LL L DND R QAE+ + + +V+ L+ ++ A +VRQ +AVLLR
Sbjct: 8 LLIQFLMPDNDARRQAEEQIKRLAKDPQVIPALIHHLRTAK-TPNVRQLSAVLLR 61
>UniRef50_Q6C1P3 Cluster: Similar to sp|P32337 Saccharomyces
cerevisiae YMR308c PSE1 beta karyopherin; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P32337 Saccharomyces
cerevisiae YMR308c PSE1 beta karyopherin - Yarrowia
lipolytica (Candida lipolytica)
Length = 1091
Score = 33.1 bits (72), Expect = 6.6
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +3
Query: 300 RXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPNIKEAGIXMFTSVPGVFGNR 479
R K+CD ++ L D++ WP+ + +F I+E+ + +VP V
Sbjct: 117 RHKLCDAMAELVE---DENTQGSWPQLVQTLFEGTQAPSGGIRESCFRLIATVPTVLNEN 173
Query: 480 QTEN 491
Q N
Sbjct: 174 QDIN 177
>UniRef50_Q11QW5 Cluster: Putative uncharacterized protein; n=1;
Cytophaga hutchinsonii ATCC 33406|Rep: Putative
uncharacterized protein - Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469)
Length = 1888
Score = 32.7 bits (71), Expect = 8.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 243 DSAQEQLLLTLQMDLSQYLRXKVCDVVSXL-ARNHIDD 353
D +E +L L DL ++L K+CD++ L ARN +D
Sbjct: 1784 DPLEEYKILWLSEDLFEFLELKICDIIEGLFARNSTND 1821
>UniRef50_A0CES7 Cluster: Chromosome undetermined scaffold_172,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_172,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1081
Score = 32.7 bits (71), Expect = 8.7
Identities = 13/65 (20%), Positives = 33/65 (50%)
Frame = +3
Query: 243 DSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPN 422
++ + L +++++S +R ++CD + + + +DD +N W L ++ + +
Sbjct: 88 ETVKLHLFQFIEVEMSHIVRNQLCDTIGEIGGSLYEDDSHNEWHNLLPTLWQMFLSPNND 147
Query: 423 IKEAG 437
I E G
Sbjct: 148 IIECG 152
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,961,375
Number of Sequences: 1657284
Number of extensions: 8644930
Number of successful extensions: 15996
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15993
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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