Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120712.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    44   2e-05
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   1.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   7.8  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/91 (26%), Positives = 43/91 (47%)
 Frame = +3

Query: 213 VLPEIAI*AADSAQEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFM 392
           V   I+  +  S Q QLL     +    +R K+CD ++ +AR+  D  G   WPE +  +
Sbjct: 87  VFSSISNESKQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQGE--WPELINVI 144

Query: 393 FTXASXQDPNIKEAGIXMFTSVPGVFGNRQT 485
           F   +  D + +E+     TS+P +   + +
Sbjct: 145 FNAVNSPDESFRESVFRTITSLPRLLSGQDS 175


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 105 CFCWNVVVCVLCL 67
           CF W++ +C+LCL
Sbjct: 215 CFLWSIYICLLCL 227


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 37  LLSTDNDIRSQAEDAYNNIP-TETKVVHLVXSIQNADIAE 153
           L S  ++IR    D YNNIP ++T    +  +I  A I E
Sbjct: 99  LNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,650
Number of Sequences: 5004
Number of extensions: 38034
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)