Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120712.seq
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 47 1e-05
AC084158-40|AAM15618.2| 354|Caenorhabditis elegans Hypothetical... 29 4.1
AC084158-39|AAM15616.2| 483|Caenorhabditis elegans Hypothetical... 29 4.1
AC084158-38|AAM15617.2| 488|Caenorhabditis elegans Hypothetical... 29 4.1
AC084158-37|AAM15615.2| 486|Caenorhabditis elegans Hypothetical... 29 4.1
Z81585-7|CAN86613.1| 127|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81585-6|CAB04684.2| 482|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z71179-1|CAA94888.1| 224|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr... 27 9.6
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +1
Query: 13 QFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVXSIQNADIAEDVRQTAAVLLRXL 192
QF +L+ L S DNDIR QAE+ Y I TKV L + + D R T V LR +
Sbjct: 5 QFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFLRRV 64
Query: 193 FS 198
+
Sbjct: 65 LA 66
>AC084158-40|AAM15618.2| 354|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1d protein.
Length = 354
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -2
Query: 324 RXHHKPXXVSTGKDPFEG*VTIVPEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 160
R + P VS K F E CL+ KW ++ CT+ + QH RRL
Sbjct: 140 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 199
Query: 159 HIF 151
H+F
Sbjct: 200 HMF 202
>AC084158-39|AAM15616.2| 483|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1b protein.
Length = 483
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -2
Query: 324 RXHHKPXXVSTGKDPFEG*VTIVPEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 160
R + P VS K F E CL+ KW ++ CT+ + QH RRL
Sbjct: 140 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 199
Query: 159 HIF 151
H+F
Sbjct: 200 HMF 202
>AC084158-38|AAM15617.2| 488|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1c protein.
Length = 488
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -2
Query: 324 RXHHKPXXVSTGKDPFEG*VTIVPEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 160
R + P VS K F E CL+ KW ++ CT+ + QH RRL
Sbjct: 145 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 204
Query: 159 HIF 151
H+F
Sbjct: 205 HMF 207
>AC084158-37|AAM15615.2| 486|Caenorhabditis elegans Hypothetical
protein Y69A2AR.1a protein.
Length = 486
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -2
Query: 324 RXHHKPXXVSTGKDPFEG*VTIVPEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 160
R + P VS K F E CL+ KW ++ CT+ + QH RRL
Sbjct: 143 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 202
Query: 159 HIF 151
H+F
Sbjct: 203 HMF 205
>Z81585-7|CAN86613.1| 127|Caenorhabditis elegans Hypothetical
protein T05E12.6b protein.
Length = 127
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 426 KEAGIXMFTSVPGVFGNRQTENLXVIKGCXY 518
K A + TS PGVF N +N + C Y
Sbjct: 31 KPANTTIGTSYPGVFNNSNIQNFPKLYNCDY 61
>Z81585-6|CAB04684.2| 482|Caenorhabditis elegans Hypothetical
protein T05E12.6a protein.
Length = 482
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 426 KEAGIXMFTSVPGVFGNRQTENLXVIKGCXY 518
K A + TS PGVF N +N + C Y
Sbjct: 31 KPANTTIGTSYPGVFNNSNIQNFPKLYNCDY 61
>Z71179-1|CAA94888.1| 224|Caenorhabditis elegans Hypothetical
protein F07D3.3 protein.
Length = 224
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 49 DNDIRSQAEDAYNNIPTETKVVHLVXSIQNAD 144
D D QA NNIP E V+H+ S + D
Sbjct: 149 DQDECMQAVQELNNIPVEDSVIHMTISTRFID 180
>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
protein W08D2.5 protein.
Length = 1256
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -3
Query: 548 KPLIHXAAKQIXTSFYHXQVFSLTI---SKYTWY 456
+P+++ ++ T FY Q+FS+T+ +Y +Y
Sbjct: 177 RPILYLLVMEVITPFYVFQIFSVTVWYNDEYAYY 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,977
Number of Sequences: 27780
Number of extensions: 221146
Number of successful extensions: 423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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