Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120712.seq
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    54   9e-08
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    37   0.011
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    37   0.014
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    28   6.7  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   8.9  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 44/200 (22%), Positives = 90/200 (45%), Gaps = 8/200 (4%)
 Frame = +3

Query: 96  NRNKSSAPSXFNSKCRHCRRCASNG-GRAVTXII*CRIL*-----VLPEIAI*AADSAQE 257
           N  K S P   + K  H  + + +  GRA+  ++  ++L      + P +++    S + 
Sbjct: 47  NLAKQSNPDTLSLKLAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKS 106

Query: 258 QLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPNIKEAG 437
            +L  +Q + ++ +  K+CD VS LA   + ++G   WPE L F+F   +   P ++E+ 
Sbjct: 107 SMLYCIQHEEAKSISKKICDTVSELASGILPENG---WPELLPFVFQCVTSVTPKLQESA 163

Query: 438 IXMFTSVPGVFGNRQTENLXVIKGCXYLLCSXMNQWLCELRAVXAVGAXILLHD--KEPI 611
             +   +    G   T ++  + G  +L C   N    +++ + A+ A I          
Sbjct: 164 FLILAQLSQYVGETLTPHIKELHG-VFLQCLSSNSASSDVK-IAALNAVISFVQCLANST 221

Query: 612 IQKHFSDVLXPLMQAIVLSI 671
            +  F DVL  +++ +  S+
Sbjct: 222 ERDRFQDVLPAMIRTLTESL 241


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 28  LNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVXSIQNADIAEDVRQTAA 174
           +N   S  ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 25  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVXSIQNADIAEDVRQTAAVLLR 186
           LL   L  DND R QAED    +  + +VV  LV  ++ A    +VRQ AAVLLR
Sbjct: 8   LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLR 61



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 26/147 (17%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
 Frame = +3

Query: 252 QEQLLLTLQMDLSQYLRXKVCDVVSXLARNHIDDDGNNXWPEFLXFMFTXASXQDPNIKE 431
           ++ L+ ++ ++ S  +R    +VVS +A+  +       WP+ L F+F  +     + +E
Sbjct: 80  KQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDLLTFLFQCSQSAQEDHRE 136

Query: 432 AGIXMFTSVPGVFGNRQTENLXVIKGCXYLLCSXMNQWLCELRAVXAVGAXI-LLHDKEP 608
             + +F+S+    GN        ++          +     + A+ AVG+ +   +D + 
Sbjct: 137 VALILFSSLTETIGNTFRPYFADLQALLLKCMQDESSSRVRVAALKAVGSFLEFTNDGDE 196

Query: 609 IIQKHFSDVLXPLMQAIVLSIEAADXD 689
           +++  F D +  ++      I + + D
Sbjct: 197 VVK--FRDFIPSILDVSRKCIASGEED 221


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 536 HXAAKQIXTSFYHXQVFSLTISKYTWYRRKHXNTXFFDV 420
           H  A  + +S     +  + +  + W+R++H    FFDV
Sbjct: 245 HKMAIAVGSSVGTVSLIFIAVGLFLWWRQRHNQNTFFDV 283


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 96  NRNKSSAPSXFNSKCRHCRRCASNGG 173
           N NK S P     KC++C RC ++GG
Sbjct: 37  NNNKKSQPRY---KCKNCCRCWTHGG 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,916
Number of Sequences: 28952
Number of extensions: 199819
Number of successful extensions: 373
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)