Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120711.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    49   4e-06
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    43   2e-04
01_07_0224 - 42121011-42122486                                         28   8.0  

>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
 Frame = +3

Query: 213 VLPEIAI*AADSAQEQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFM 392
           V P ++     + ++ LL  LQ D  + + +KVCD +SELA   + +   N W E L F+
Sbjct: 99  VWPHLSPAGQAALKQHLLSALQSDPPKPIAKKVCDAISELAALLLPE---NAWAELLPFL 155

Query: 393 FTCASAQD-PNIKEAGIRMFTSVPGVFGNRQTENLDVI 503
           F  AS  + PN++E+ + +F  +         ++L  I
Sbjct: 156 FRAASGPEAPNLQESALLIFARLADYIAESLLDHLMTI 193



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +1

Query: 10  AQFYQLLNTLLSTDNDIRSQAEDAYNNIP---TETKVVHLVNSIQNADIAEDVRQTAAVL 180
           A F  LL+TL+S+ N  R+ AE A++ +     E   + L +S+ +     D+R  AAVL
Sbjct: 19  AAFDALLSTLMSSSNADRAAAEAAFHRLRGSHPEPLALRLASSLSSPATPADLRAMAAVL 78

Query: 181 LRRLFS 198
           LR+L S
Sbjct: 79  LRKLLS 84


>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 49/93 (52%)
 Frame = +3

Query: 219 PEIAI*AADSAQEQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFT 398
           P++   A  S ++ L+ ++ +D S  +RR   +VVS +A+  +      +WPE L F+F 
Sbjct: 69  PKLPPHAKASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPA---GEWPELLPFIFQ 125

Query: 399 CASAQDPNIKEAGIRMFTSVPGVFGNRQTENLD 497
           C+ +   + +E  + +F+S+    G     +L+
Sbjct: 126 CSQSPQEDHREVALILFSSLTETIGTTFQSHLN 158



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 25  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVNSIQNADIAEDVRQTAAVLLRR 189
           LL   L  DND R QAE+    +  + +VV  LV+ ++ A    +VRQ AAVLLR+
Sbjct: 8   LLIQFLMPDNDARRQAEEQIRRLARDPQVVPALVHHLRTAK-TPNVRQLAAVLLRK 62



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 509 MLISALQPNESMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQV 655
           +L+  LQ   S  +R  A+KAVG+FI   +    + K F D +  ++ V
Sbjct: 163 ILLKCLQDEASSRVRIAALKAVGSFIEYVNDGGDVVKIFRDFVPSILNV 211


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 327 ELARNHIDDDGNNQWPEFLQFMF 395
           +L    ++D G  +WP F+QF F
Sbjct: 7   DLGGGGVEDGGGKKWPGFVQFFF 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,749,132
Number of Sequences: 37544
Number of extensions: 357991
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)