Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120711.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     88   5e-18
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   3.5  
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32)                   28   8.1  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 37/85 (43%), Positives = 57/85 (67%)
 Frame = +3

Query: 252 QEQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKE 431
           +E LL  +  +    +R+K+CD VSEL+++ +DDDG N W E L+F+F C ++    +KE
Sbjct: 59  KESLLKGIHEEQDSNVRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAELKE 118

Query: 432 AGIRMFTSVPGVFGNRQTENLDVIK 506
           + + +F S PGVFGN+Q   L+VIK
Sbjct: 119 SALNIFCSFPGVFGNQQDHYLNVIK 143



 Score = 27.9 bits (59), Expect(2) = 0.021
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 13 QFYQLLNTLLSTDNDIRSQAE 75
          QF  L+  L+S DND R+QAE
Sbjct: 7  QFEALIGQLMSPDNDTRNQAE 27



 Score = 27.5 bits (58), Expect(2) = 0.021
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 154 DVRQTAAVLLRRLFSA 201
           +VRQ AAVLLRR+F+A
Sbjct: 27  EVRQMAAVLLRRIFTA 42


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 306 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFTCASAQDPN 422
           ++ D+++++A   +D DGN    +PEFLQ M       DP+
Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289


>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 446 VYVCTRCIWK--SSD*KLGCDKRMLISALQPNESMALRTQA 562
           V VC  C  K  S+D  +GCD   L SAL+ ++S +  ++A
Sbjct: 541 VRVCDSCFSKRASTDEGIGCDMSELASALEDSDSGSQSSRA 581


>SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32)
          Length = 255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 446 VYVCTRCIWK--SSD*KLGCDKRMLISALQPNESMALRTQA 562
           V VC  C  K  S+D  +GCD   L SAL+ ++S +  ++A
Sbjct: 103 VRVCDSCFSKRASTDEGIGCDMSELASALEDSDSGSQSSRA 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,794,631
Number of Sequences: 59808
Number of extensions: 413714
Number of successful extensions: 1029
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)