BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120711.seq (686 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p pro... 108 6e-24 AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA ... 108 6e-24 U57758-1|AAB49932.1| 360|Drosophila melanogaster putative thyro... 30 3.4 AY071174-1|AAL48796.1| 195|Drosophila melanogaster RE22911p pro... 30 3.4 AY069836-1|AAL39981.1| 444|Drosophila melanogaster SD08021p pro... 30 3.4 AF129079-1|AAD28604.1| 444|Drosophila melanogaster COP9 signalo... 30 3.4 AE014297-1902|AAX52952.1| 1357|Drosophila melanogaster CG33555-P... 30 3.4 AE014297-892|AAF54348.1| 195|Drosophila melanogaster CG9740-PA ... 30 3.4 AE014134-1594|AAF52736.1| 444|Drosophila melanogaster CG9556-PB... 30 3.4 AE014134-1593|AAN10685.1| 444|Drosophila melanogaster CG9556-PA... 30 3.4 AE014297-202|AAF52054.1| 562|Drosophila melanogaster CG1113-PA ... 29 6.0 >BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p protein. Length = 1000 Score = 108 bits (260), Expect = 6e-24 Identities = 42/84 (50%), Positives = 69/84 (82%) Frame = +3 Query: 255 EQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEA 434 +Q+LL +Q +++ LRRK+C+VV+E+ARN ID+D NNQWP+ LQF+F CA++ P ++E+ Sbjct: 88 QQILLAVQQEVTPQLRRKICEVVAEVARNLIDEDCNNQWPDILQFLFQCANSPTPQLQES 147 Query: 435 GIRMFTSVPGVFGNRQTENLDVIK 506 +R+F+SVP +FGN++ + +D+IK Sbjct: 148 ALRIFSSVPSIFGNQEAQYIDLIK 171 Score = 85.4 bits (202), Expect = 6e-17 Identities = 40/64 (62%), Positives = 50/64 (78%) Frame = +1 Query: 7 EAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLR 186 +A F QLL +LLSTDND+R QAE+AYNN+ E KV HL+ +IQN +E+ RQ AAVLLR Sbjct: 5 QAHFQQLLASLLSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQQSEEARQMAAVLLR 64 Query: 187 RLFS 198 RLF+ Sbjct: 65 RLFT 68 Score = 55.6 bits (128), Expect = 6e-08 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +2 Query: 503 KRMLISALQPNESMALRTQAVKAVGAFILLHDK--EPIIQKHFSDVLLPLMQVIVLSIEA 676 K+ML ++ +R QAV+AVGAFIL HDK E I KHF+D+L ++ + +IEA Sbjct: 171 KQMLAKSMDAGSDPEVRVQAVRAVGAFILYHDKENETAIHKHFADMLPRMIHITGETIEA 230 Query: 677 ADD 685 DD Sbjct: 231 QDD 233 >AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA protein. Length = 1105 Score = 108 bits (260), Expect = 6e-24 Identities = 42/84 (50%), Positives = 69/84 (82%) Frame = +3 Query: 255 EQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEA 434 +Q+LL +Q +++ LRRK+C+VV+E+ARN ID+D NNQWP+ LQF+F CA++ P ++E+ Sbjct: 88 QQILLAVQQEVTPQLRRKICEVVAEVARNLIDEDCNNQWPDILQFLFQCANSPTPQLQES 147 Query: 435 GIRMFTSVPGVFGNRQTENLDVIK 506 +R+F+SVP +FGN++ + +D+IK Sbjct: 148 ALRIFSSVPSIFGNQEAQYIDLIK 171 Score = 85.4 bits (202), Expect = 6e-17 Identities = 40/64 (62%), Positives = 50/64 (78%) Frame = +1 Query: 7 EAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLR 186 +A F QLL +LLSTDND+R QAE+AYNN+ E KV HL+ +IQN +E+ RQ AAVLLR Sbjct: 5 QAHFQQLLASLLSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQQSEEARQMAAVLLR 64 Query: 187 RLFS 198 RLF+ Sbjct: 65 RLFT 68 Score = 55.6 bits (128), Expect = 6e-08 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +2 Query: 503 KRMLISALQPNESMALRTQAVKAVGAFILLHDK--EPIIQKHFSDVLLPLMQVIVLSIEA 676 K+ML ++ +R QAV+AVGAFIL HDK E I KHF+D+L ++ + +IEA Sbjct: 171 KQMLAKSMDAGSDPEVRVQAVRAVGAFILYHDKENETAIHKHFADMLPRMIHITGETIEA 230 Query: 677 ADD 685 DD Sbjct: 231 QDD 233 >U57758-1|AAB49932.1| 360|Drosophila melanogaster putative thyroid receptor interactingprotein protein. Length = 360 Score = 29.9 bits (64), Expect = 3.4 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 13 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 153 ++ L N L+ + N SQ Y N P + +LVNS QN DI E Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326 >AY071174-1|AAL48796.1| 195|Drosophila melanogaster RE22911p protein. Length = 195 Score = 29.9 bits (64), Expect = 3.4 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 105 KSSAPSEFNSKCRHCRRCASN 167 K P ++ + C HCR+C SN Sbjct: 32 KDGEPKKYRALCTHCRKCQSN 52 >AY069836-1|AAL39981.1| 444|Drosophila melanogaster SD08021p protein. Length = 444 Score = 29.9 bits (64), Expect = 3.4 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 13 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 153 ++ L N L+ + N SQ Y N P + +LVNS QN DI E Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326 >AF129079-1|AAD28604.1| 444|Drosophila melanogaster COP9 signalosome subunit 2 CSN2 protein. Length = 444 Score = 29.9 bits (64), Expect = 3.4 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 13 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 153 ++ L N L+ + N SQ Y N P + +LVNS QN DI E Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326 >AE014297-1902|AAX52952.1| 1357|Drosophila melanogaster CG33555-PA, isoform A protein. Length = 1357 Score = 29.9 bits (64), Expect = 3.4 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 78 RIQQHSNRNK-SSAPSEFNSKCRHCRRCASNGGRAVTKII*CRI 206 +++QH+N N +S PS RHC RC + GR + CR+ Sbjct: 10 QLEQHNNHNAHTSDPS------RHCARCTTELGRITNRGAPCRV 47 >AE014297-892|AAF54348.1| 195|Drosophila melanogaster CG9740-PA protein. Length = 195 Score = 29.9 bits (64), Expect = 3.4 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 105 KSSAPSEFNSKCRHCRRCASN 167 K P ++ + C HCR+C SN Sbjct: 32 KDGEPKKYRALCTHCRKCQSN 52 >AE014134-1594|AAF52736.1| 444|Drosophila melanogaster CG9556-PB, isoform B protein. Length = 444 Score = 29.9 bits (64), Expect = 3.4 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 13 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 153 ++ L N L+ + N SQ Y N P + +LVNS QN DI E Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326 >AE014134-1593|AAN10685.1| 444|Drosophila melanogaster CG9556-PA, isoform A protein. Length = 444 Score = 29.9 bits (64), Expect = 3.4 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 13 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 153 ++ L N L+ + N SQ Y N P + +LVNS QN DI E Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326 >AE014297-202|AAF52054.1| 562|Drosophila melanogaster CG1113-PA protein. Length = 562 Score = 29.1 bits (62), Expect = 6.0 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 4 HEAQFYQLLNTLLSTDNDIRSQAEDA 81 H +FY L +L ST ++RSQA A Sbjct: 80 HRVEFYSTLESLRSTSRELRSQAATA 105 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 30,208,076 Number of Sequences: 53049 Number of extensions: 628714 Number of successful extensions: 1429 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1371 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1424 length of database: 24,988,368 effective HSP length: 82 effective length of database: 20,638,350 effective search space used: 3013199100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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