Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120711.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    50   2e-06
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical...    29   2.4  
AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical...    29   2.4  
AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical...    29   2.4  
AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical...    29   2.4  
AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophil...    27   9.5  
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 33/62 (53%)
 Frame = +1

Query: 13  QFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRL 192
           QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V LRR+
Sbjct: 5   QFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFLRRV 64

Query: 193 FS 198
            +
Sbjct: 65  LA 66



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/70 (31%), Positives = 37/70 (52%)
 Frame = +3

Query: 297 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 476
           +++K+ D++SE+A N IDD G+  W   L+ M  C  ++D       + +    P +FGN
Sbjct: 100 IKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGN 159

Query: 477 RQTENLDVIK 506
           R    L  +K
Sbjct: 160 RLAHFLPTLK 169


>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = -1

Query: 548 KPLIHLAAKQILTSFYHIQVFSLTISKYTWYRRKHS 441
           +P+++L   +++T FY  Q+FS+T+    WY  +++
Sbjct: 177 RPILYLLVMEVITPFYVFQIFSVTV----WYNDEYA 208


>AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1d protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -3

Query: 324 RLHHKPFFVSTGKDPFEG*VTIVPEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 160
           RL+  P  VS  K  F        E CL+      KW  ++     CT+ +  QH RRL 
Sbjct: 140 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 199

Query: 159 HIF 151
           H+F
Sbjct: 200 HMF 202


>AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1b protein.
          Length = 483

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -3

Query: 324 RLHHKPFFVSTGKDPFEG*VTIVPEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 160
           RL+  P  VS  K  F        E CL+      KW  ++     CT+ +  QH RRL 
Sbjct: 140 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 199

Query: 159 HIF 151
           H+F
Sbjct: 200 HMF 202


>AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1c protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -3

Query: 324 RLHHKPFFVSTGKDPFEG*VTIVPEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 160
           RL+  P  VS  K  F        E CL+      KW  ++     CT+ +  QH RRL 
Sbjct: 145 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 204

Query: 159 HIF 151
           H+F
Sbjct: 205 HMF 207


>AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -3

Query: 324 RLHHKPFFVSTGKDPFEG*VTIVPEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 160
           RL+  P  VS  K  F        E CL+      KW  ++     CT+ +  QH RRL 
Sbjct: 143 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 202

Query: 159 HIF 151
           H+F
Sbjct: 203 HMF 205


>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 446 VYVCTRCIWKSSD*KLGCDKRMLISALQPNESMALRTQAVKAVGAFILLHDKEP 607
           V   TRC       +L    R+ ++  + N +   +   + A+G+ + LHD+EP
Sbjct: 76  VSTTTRCHSGRKVHQLKNPSRVTVTQEEENRNFEKKKSRIDAIGSLLSLHDEEP 129


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 264  LLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIR 443
            LL    D    +R   C  +S+L R H   + +   PE+L+ +         +++EA  R
Sbjct: 1123 LLPALTDREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182

Query: 444  MFTSV 458
               S+
Sbjct: 1183 AADSI 1187


>U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophila
           mutagen sensitive)related protein 81, isoform a protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 560 PEFAKPLIHLAAKQILTSFYHIQVFSLTISKYTWYRRKHSNTSFFDVWILRTGT 399
           P F   + HL  K+ +     + + SL++  Y W  RK   T     W++   T
Sbjct: 222 PRFKSVIEHLVKKEDI----RVDIRSLSVGDYIWICRKIDGTEIVMDWVVERKT 271


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 418  QTSKKLVLE-CLRLYQVYLEIVRLKTWM 498
            +T  K VL+ C+R+ Q   E+ RLK W+
Sbjct: 1546 RTDLKSVLDQCIRILQAMREMARLKNWL 1573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,559,651
Number of Sequences: 27780
Number of extensions: 324384
Number of successful extensions: 907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)