Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120711.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    60   1e-09
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    40   0.002
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    36   0.019
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    29   2.2  
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    29   3.8  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   8.8  
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i...    27   8.8  
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i...    27   8.8  
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i...    27   8.8  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
 Frame = +3

Query: 96  NRNKSSAPSEFNSKCRHCRRCASNG-GRAVTKII*CRIL*-----VLPEIAI*AADSAQE 257
           N  K S P   + K  H  + + +  GRA+  ++  ++L      + P +++    S + 
Sbjct: 47  NLAKQSNPDTLSLKLAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKS 106

Query: 258 QLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAG 437
            +L  +Q + ++ + +K+CD VSELA   + ++G   WPE L F+F C ++  P ++E+ 
Sbjct: 107 SMLYCIQHEEAKSISKKICDTVSELASGILPENG---WPELLPFVFQCVTSVTPKLQESA 163

Query: 438 IRMFTSVPGVFGNRQTENLDVIKGC*YLLCSQMN 539
             +   +    G   T ++  + G  +L C   N
Sbjct: 164 FLILAQLSQYVGETLTPHIKELHGV-FLQCLSSN 196


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/75 (25%), Positives = 42/75 (56%)
 Frame = +3

Query: 252 QEQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKE 431
           ++ L+ ++ ++ S  +RR   +VVS +A+  +      +WP+ L F+F C+ +   + +E
Sbjct: 80  KQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDLLTFLFQCSQSAQEDHRE 136

Query: 432 AGIRMFTSVPGVFGN 476
             + +F+S+    GN
Sbjct: 137 VALILFSSLTETIGN 151



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 25  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVNSIQNADIAEDVRQTAAVLLRR 189
           LL   L  DND R QAED    +  + +VV  LV  ++ A    +VRQ AAVLLR+
Sbjct: 8   LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRK 62



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 509 MLISALQPNESMALRTQAVKAVGAFI-LLHDKEPIIQKHFSDVLLPLMQV 655
           +L+  +Q   S  +R  A+KAVG+F+   +D + +++  F D +  ++ V
Sbjct: 163 LLLKCMQDESSSRVRVAALKAVGSFLEFTNDGDEVVK--FRDFIPSILDV 210


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 28  LNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAA 174
           +N   S  ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 536 HLAAKQILTSFYHIQVFSLTISKYTWYRRKHSNTSFFDV 420
           H  A  + +S   + +  + +  + W+R++H+  +FFDV
Sbjct: 245 HKMAIAVGSSVGTVSLIFIAVGLFLWWRQRHNQNTFFDV 283


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 16  FYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVN 126
           FY L +T+L   N    +A  +Y N+ T+T  + L+N
Sbjct: 337 FYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMN 373


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 96  NRNKSSAPSEFNSKCRHCRRCASNGG 173
           N NK S P     KC++C RC ++GG
Sbjct: 37  NNNKKSQP---RYKCKNCCRCWTHGG 59


>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 302

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 497 CDKRMLISALQPNESMALRTQAVKAVG 577
           CD  +LI+ L P + + L   AVK +G
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIG 254


>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 497 CDKRMLISALQPNESMALRTQAVKAVG 577
           CD  +LI+ L P + + L   AVK +G
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIG 254


>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 497 CDKRMLISALQPNESMALRTQAVKAVG 577
           CD  +LI+ L P + + L   AVK +G
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIG 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,972
Number of Sequences: 28952
Number of extensions: 292984
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)