Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120707.seq
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   31   0.68 
SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   30   2.1  
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   3.6  
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)               29   3.6  
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   8.4  

>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 543 GFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPXC 662
           GF Y    D V C  C   ++NW  D+     H   SP C
Sbjct: 156 GFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWSPHC 195


>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 510 NTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPXC 662
           ++A +  L   GF +   DD V C  C+  +K W  D+    +H    P C
Sbjct: 149 SSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREFYPDC 199


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 635 IFNTLVFGPIFYFCFTILAHNVIVDLIVFK 546
           IFNT +  PI+Y  FT+L   +I   I+FK
Sbjct: 485 IFNTSLVTPIYYVMFTLL--TIIASAILFK 512


>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
          Length = 1481

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 425  GTTFATTSPNTYSTCY*KDMARLKIIPLKHGVYQQLD 535
            G    T +P++ S CY  +    KI P KH  + Q+D
Sbjct: 1292 GIPVVTITPDSCSECYHDNQDSRKIRPQKHVTFSQMD 1328


>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 2629

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 106 QNYTVLKRLSNG---FIDKSVDVGSISELQKFNFKINRLTSYISNIFEY 243
           QN +V+KRL +G    +DK++ +G      +    +  L  +++ IFEY
Sbjct: 178 QNLSVIKRLGSGNFGHVDKAMAIGIPGFPGQVTVAVKTLKDHLAIIFEY 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,931,367
Number of Sequences: 59808
Number of extensions: 381955
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)