Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120707.seq
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38730.1 68417.m05486 expressed protein                             30   1.7  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    29   3.9  
At4g09640.1 68417.m01584 expressed protein several hypothetical ...    29   3.9  
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR...    29   3.9  
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR...    28   5.2  
At3g23870.1 68416.m03000 permease-related low similarity to puri...    28   5.2  
At1g34470.1 68414.m04283 permease-related low similarity to puri...    28   5.2  
At1g71900.1 68414.m08312 expressed protein                             28   6.8  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    27   9.0  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    27   9.0  
At1g04050.1 68414.m00392 SET domain-containing protein / suppres...    27   9.0  

>At4g38730.1 68417.m05486 expressed protein
          Length = 326

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 632 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 522
           FN  +  PI+Y  FT L   ++   I+FK  N Q  D
Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 564 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPXCADANKIAEH 689
           D++++C+ C   I   +   C++     L   CA+A++  +H
Sbjct: 388 DENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKKDH 429


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 632 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 528
           FNT V  PI+Y  FT L   ++  +I+FK  + Q+
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283


>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 776

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 203 ILKLNFCNSLIEPTSTDLSINPLLN 129
           IL L FC SL+E  S+  ++N LLN
Sbjct: 655 ILNLKFCESLVELPSSIRNLNKLLN 679


>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 203 ILKLNFCNSLIEPTSTDLSINPLL 132
           ILKL FC SL+E  S+  ++N LL
Sbjct: 654 ILKLGFCKSLVELPSSIRNLNKLL 677


>At3g23870.1 68416.m03000 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007; contains 9
           predicted transmembrane domains; contains Pfam PF05653:
           Protein of unknown function (DUF803); identified as
           COG0697, Permeases of the drug/metabolite transporter
           (DMT) superfamily
          Length = 335

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 632 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 546
           FNT V  P++Y  FT     +I  +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266


>At1g34470.1 68414.m04283 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007
          Length = 368

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 632 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 546
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277


>At1g71900.1 68414.m08312 expressed protein
          Length = 343

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 632 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 546
           FNT +  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 160 DVGSISELQKFNFKINRLTSYISNI 234
           +VGS+ +LQK N   N+L S+ S +
Sbjct: 425 NVGSLKDLQKLNLSFNQLESFGSEL 449


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 632 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 546
           FNT V  P++Y  FT     ++  +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTILASMIMFK 266


>At1g04050.1 68414.m00392 SET domain-containing protein / suppressor
           of variegation related 1 (SUVR1) identical to suppressor
           of variegation related 1 [Arabidopsis thaliana]
           GI:15004614; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA trithorax 3
           (ATX3) partial cds GI:15217142
          Length = 630

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 22  VDNAFAYTTDDLLKNISFSHSKCAPFKLQNYTVLK 126
           VDN FAYT D LLK   F  ++ +  + Q   VL+
Sbjct: 377 VDNGFAYTLDGLLKE-EFLEARISEARDQRKQVLR 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,652,692
Number of Sequences: 28952
Number of extensions: 260833
Number of successful extensions: 601
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)