Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120700.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0265 - 13638816-13641348,13641432-13641490                       28   6.0  
02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831...    28   8.0  

>04_03_0265 - 13638816-13641348,13641432-13641490
          Length = 863

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -2

Query: 410 NV*IKIFKSTSRDMVCHSLARVASHNLATMWFLSNEDS 297
           NV I I    S DMV H    V       MW L NE S
Sbjct: 771 NVLIDIIDKKSTDMVSHHQEEVIKMLKLAMWCLQNESS 808


>02_04_0619 -
           24481641-24482291,24482426-24482640,24482770-24483154,
           24483170-24483258,24485488-24485622,24485833-24487108
          Length = 916

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 381 GRLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFY 503
           G+L  F L +N+DG + I+V A  +Q    + T D ++  Y
Sbjct: 824 GKLPPFTLPVNHDGYMHIYVYAYQDQLDDARHTPDGVISDY 864


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,832
Number of Sequences: 37544
Number of extensions: 222350
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)