BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120700.seq (687 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7) 31 1.2 SB_17066| Best HMM Match : PHD (HMM E-Value=1.6) 30 2.0 SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12) 29 3.5 SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7) 29 4.7 SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1) 29 4.7 >SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7) Length = 170 Score = 30.7 bits (66), Expect = 1.2 Identities = 17/71 (23%), Positives = 32/71 (45%) Frame = +2 Query: 50 MDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNN 229 M+ +Q + +S + + T DEN+ DN+ E+ + C+ L + +G L + Sbjct: 97 MEAMKQYVPLSNMGFITGTDEDENMPDNVDYKGERRRMAICEELEREIFFWGQDLYTLRS 156 Query: 230 KKIRNYYLKRF 262 + Y L F Sbjct: 157 LLVVQYKLNGF 167 >SB_17066| Best HMM Match : PHD (HMM E-Value=1.6) Length = 523 Score = 29.9 bits (64), Expect = 2.0 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +2 Query: 521 KNGVMVRRDEKSRVFIVKNEPNIEYLKANKYYAFHSDRLDNFEFEN 658 +NG+ +R +K +V V++ PN+E N + S+++D + +N Sbjct: 200 ENGISGKRKQKKKVTFVESAPNLELQTHNAKTSPKSNQIDIVKLDN 245 >SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12) Length = 288 Score = 29.1 bits (62), Expect = 3.5 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +2 Query: 2 GTRFYAPYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEK 154 GT+F T V I FE+ + +LKSL K I E V+ I S++ K Sbjct: 110 GTKFELTETKEVKI--EVTFEKYLEPKILKSLFKNHIYEEVAYEIYSLNNK 158 >SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1182 Score = 29.1 bits (62), Expect = 3.5 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Frame = +2 Query: 29 HRVDIINMDQFEQLINVSLLKSLIKTQID--ENVSDNI-KSMSEKLKRLECDNLTDSVEI 199 H+ + +++ Q L+ V L+ S ++T I+ V D KS E + ++ C E Sbjct: 811 HQAETLSVIQSLILVFVKLMNSQLETTIEFLSGVPDPTGKSALENILKIWCAR---QPEF 867 Query: 200 YGIHDNRLNNKKIRN 244 YG++DN+++ + N Sbjct: 868 YGVYDNKVSTLALCN 882 >SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7) Length = 100 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +2 Query: 521 KNGVMVRRDEKSRVFIVKNEPNIEYLKANKYYAFHSDRLDNFEFE 655 +NG+ +R +K +V V++ PN+E N + S+++D + E Sbjct: 44 ENGISGKRKQKKKVTFVESAPNLELQTHNAKTSPKSNQIDIVKLE 88 >SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1) Length = 330 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +2 Query: 521 KNGVMVRRDEKSRVFIVKNEPNIEYLKANKYYAFHSDRLDNFEFE 655 +NG+ +R +K +V V++ PN+E N + S+++D + E Sbjct: 274 ENGISGKRKQKKKVTFVESAPNLELQTHNAKTSPKSNQIDIVKLE 318 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,791,150 Number of Sequences: 59808 Number of extensions: 293936 Number of successful extensions: 785 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 714 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 785 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1781448916 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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