Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120700.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)                 31   1.2  
SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)                       30   2.0  
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)                  29   3.5  
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7)                      29   4.7  
SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)                       29   4.7  

>SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)
          Length = 170

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +2

Query: 50  MDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNN 229
           M+  +Q + +S +  +  T  DEN+ DN+    E+ +   C+ L   +  +G     L +
Sbjct: 97  MEAMKQYVPLSNMGFITGTDEDENMPDNVDYKGERRRMAICEELEREIFFWGQDLYTLRS 156

Query: 230 KKIRNYYLKRF 262
             +  Y L  F
Sbjct: 157 LLVVQYKLNGF 167


>SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)
          Length = 523

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +2

Query: 521 KNGVMVRRDEKSRVFIVKNEPNIEYLKANKYYAFHSDRLDNFEFEN 658
           +NG+  +R +K +V  V++ PN+E    N   +  S+++D  + +N
Sbjct: 200 ENGISGKRKQKKKVTFVESAPNLELQTHNAKTSPKSNQIDIVKLDN 245


>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
          Length = 288

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +2

Query: 2   GTRFYAPYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEK 154
           GT+F    T  V I     FE+ +   +LKSL K  I E V+  I S++ K
Sbjct: 110 GTKFELTETKEVKI--EVTFEKYLEPKILKSLFKNHIYEEVAYEIYSLNNK 158


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +2

Query: 29   HRVDIINMDQFEQLINVSLLKSLIKTQID--ENVSDNI-KSMSEKLKRLECDNLTDSVEI 199
            H+ + +++ Q   L+ V L+ S ++T I+    V D   KS  E + ++ C       E 
Sbjct: 811  HQAETLSVIQSLILVFVKLMNSQLETTIEFLSGVPDPTGKSALENILKIWCAR---QPEF 867

Query: 200  YGIHDNRLNNKKIRN 244
            YG++DN+++   + N
Sbjct: 868  YGVYDNKVSTLALCN 882


>SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7)
          Length = 100

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 521 KNGVMVRRDEKSRVFIVKNEPNIEYLKANKYYAFHSDRLDNFEFE 655
           +NG+  +R +K +V  V++ PN+E    N   +  S+++D  + E
Sbjct: 44  ENGISGKRKQKKKVTFVESAPNLELQTHNAKTSPKSNQIDIVKLE 88


>SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)
          Length = 330

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 521 KNGVMVRRDEKSRVFIVKNEPNIEYLKANKYYAFHSDRLDNFEFE 655
           +NG+  +R +K +V  V++ PN+E    N   +  S+++D  + E
Sbjct: 274 ENGISGKRKQKKKVTFVESAPNLELQTHNAKTSPKSNQIDIVKLE 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,791,150
Number of Sequences: 59808
Number of extensions: 293936
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)