Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120700.seq
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 31 0.58
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 31 0.58
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 31 0.58
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 31 0.58
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 31 0.58
AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical ... 29 3.1
AL034393-5|CAA22311.1| 362|Caenorhabditis elegans Hypothetical ... 29 3.1
AF159950-1|AAD45354.1| 362|Caenorhabditis elegans GSK-3 protein. 29 3.1
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF016417-3|AAB65281.1| 457|Caenorhabditis elegans Hypothetical ... 28 7.2
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 41 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 41 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 41 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 41 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 41 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 196
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical
protein Y116F11B.6 protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 101 KTQIDENVSDNIKSMSEKLKRLECDNLTDS-VEIYGIHDNRLNNKKIRNYYLKRFAFY 271
K +I E+V +NIK KLK++E NL +S E+ H LN K++ KR Y
Sbjct: 219 KIRIIEDV-ENIKKQDVKLKKIE-KNLKESRKELKEAHQEYLNRKELAKKGNKREGTY 274
>AL034393-5|CAA22311.1| 362|Caenorhabditis elegans Hypothetical
protein Y18D10A.5 protein.
Length = 362
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 521 KNGVMVRRDEKSRVFIVKNEPNIEYLKANKYY 616
++GV+ D S ++V+NEPN+ Y+ ++YY
Sbjct: 172 ESGVLKLCDFGSAKYLVRNEPNVSYI-CSRYY 202
>AF159950-1|AAD45354.1| 362|Caenorhabditis elegans GSK-3 protein.
Length = 362
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 521 KNGVMVRRDEKSRVFIVKNEPNIEYLKANKYY 616
++GV+ D S ++V+NEPN+ Y+ ++YY
Sbjct: 172 ESGVLKLCDFGSAKYLVRNEPNVSYI-CSRYY 202
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 295 IESSFDKNHIVAKLCDATRAKEWQTMS 375
+ES++DK H + + C T + +W T +
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTFT 157
>AF016417-3|AAB65281.1| 457|Caenorhabditis elegans Hypothetical
protein F17A9.4 protein.
Length = 457
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 170 CDNLTDSVEIYGIHDNRLNNKKIRNYYLK 256
CDNLT S +I G N N K +N +LK
Sbjct: 7 CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,749
Number of Sequences: 27780
Number of extensions: 224620
Number of successful extensions: 708
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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