Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120700.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ...    28   6.7  
At5g19450.2 68418.m02318 calcium-dependent protein kinase 19 (CD...    27   8.8  
At5g19450.1 68418.m02317 calcium-dependent protein kinase 19 (CD...    27   8.8  

>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +2

Query: 98  IKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKK 235
           I+T ++EN +D+ +  ++KLK ++ +    S   YG+ +N   NK+
Sbjct: 28  IRTHMNENSADSDEDEADKLKMIDENGGQSS---YGLRENPKKNKR 70


>At5g19450.2 68418.m02318 calcium-dependent protein kinase 19
           (CDPK19) identical to calcium-dependent protein kinase
           [Arabidopsis thaliana] gi|836942|gb|AAA67655
          Length = 533

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 497 VLQIISIC-KNGVMVRRDEKSRVFIVKNEPNIEYLKA 604
           +L+++ IC K+GVM  RD K   F+  N+     LKA
Sbjct: 165 ILEVVQICHKHGVM-HRDLKPENFLFANKKETSALKA 200


>At5g19450.1 68418.m02317 calcium-dependent protein kinase 19
           (CDPK19) identical to calcium-dependent protein kinase
           [Arabidopsis thaliana] gi|836942|gb|AAA67655
          Length = 533

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 497 VLQIISIC-KNGVMVRRDEKSRVFIVKNEPNIEYLKA 604
           +L+++ IC K+GVM  RD K   F+  N+     LKA
Sbjct: 165 ILEVVQICHKHGVM-HRDLKPENFLFANKKETSALKA 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,499,517
Number of Sequences: 28952
Number of extensions: 194346
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)