Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120695.seq
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)                28   6.4  
SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.4  

>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
 Frame = +3

Query: 27  IMYSTSKINNARVVA------SQHD----YDRDQIKRELNSLRRNVHDMCTRSGTSFD 170
           ++Y+  K +NA  VA      SQ+     + R+++  +L+ + +++HD C + GT  D
Sbjct: 690 VLYAPGKASNAGGVAVSGLEMSQNSLRGAWTREEVDEKLSGIMKSIHDTCVQYGTCKD 747


>SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)
          Length = 196

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 66  VASQHDYDRDQIKRELNSLRRNVHD 140
           ++S+H+ ++D+I+ ELN  RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154


>SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 66  VASQHDYDRDQIKRELNSLRRNVHD 140
           ++S+H+ ++D+I+ ELN  RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,950,595
Number of Sequences: 59808
Number of extensions: 294438
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)