Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120695.seq
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   4.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   4.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.6  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 213 SLRGSCHRCVETCYNQNSCLNACTYRARYVASYL 112
           S+R    +CV+   N++ CL A  + +R V  Y+
Sbjct: 93  SIRKIIRQCVDNAKNEDKCLTAQKF-SRCVIDYV 125


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 251 YQYVSDVKTIKPSNRPLVESGPLVQEAA 334
           Y+Y+  ++ + PSN  L+     V E+A
Sbjct: 322 YKYLQLIENVIPSNEELICDKRFVDESA 349


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 251 YQYVSDVKTIKPSNRPLVESGPLVQEAA 334
           Y+Y+  ++ + PSN  L+     V E+A
Sbjct: 337 YKYLQLIENVIPSNEELICDKRFVDESA 364


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 58  ALLIFDVLYIIYYWI 14
           A +IF++LY  + WI
Sbjct: 455 AFIIFNILYWSFIWI 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,506
Number of Sequences: 438
Number of extensions: 2639
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)