Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120695.seq
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28190.1 68418.m03413 hypothetical protein                          32   0.32 
At3g27290.1 68416.m03411 F-box family protein-related contains w...    27   9.2  
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ...    27   9.2  
At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing ...    27   9.2  
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ...    27   9.2  

>At5g28190.1 68418.m03413 hypothetical protein
          Length = 839

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 218 DHAXKNCRLQNYQYVSDVKTIKPSNRPLVESGPLVQEAAK 337
           +H   +C L   QY SDVKTI P+N+   +   ++Q   K
Sbjct: 710 NHLQPSCALIRKQYTSDVKTISPANQEEEDLEGMMQRIKK 749


>At3g27290.1 68416.m03411 F-box family protein-related contains weak
           similarity to PPA [Mus musculus] GP|18568225|gb|AAL75967
          Length = 382

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 201 SCHRCVETCYNQNSCLNAC 145
           +C  C+E C+   SCLN C
Sbjct: 342 ACVVCIERCHECGSCLNDC 360


>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
           protein
          Length = 279

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 212 DNDHAXKNCRLQNYQYVSDVKTIKPSNRPLVESGPLVQE 328
           D+D    N  + +   VS VKT+K SN  L+ S   V+E
Sbjct: 9   DSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKE 47


>At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing
           protein
          Length = 279

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 212 DNDHAXKNCRLQNYQYVSDVKTIKPSNRPLVESGPLVQE 328
           D+D    N  + +   VS VKT+K SN  L+ S   V+E
Sbjct: 10  DSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKE 48


>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
           protein
          Length = 278

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 212 DNDHAXKNCRLQNYQYVSDVKTIKPSNRPLVESGPLVQE 328
           D+D    N  + +   VS VKT+K SN  L+ S   V+E
Sbjct: 9   DSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKE 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,136,709
Number of Sequences: 28952
Number of extensions: 193372
Number of successful extensions: 410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)