Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120693.seq
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   3.4  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   4.5  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   4.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.0  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   6.0  
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    25   7.9  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   7.9  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -2

Query: 646 MASNNCSANLSNMSVKSGNESVISESNVFNLVKITSLAVSNAARSCRFDCARPSSRWTI 470
           + S++ SA  S  S+ S + ++ S  +  +   ++S   S    S     A PSS W +
Sbjct: 136 LTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSSSGFSTVLSSTNTTSALPSSGWNV 194


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 13  RHGLH-LSKFKNAFASVSTTFVHHPI 87
           R GL   SKF  AFAS+S+ F+H+ +
Sbjct: 39  RSGLSKFSKFVYAFASISSGFLHYQL 64


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 462 LISLVEIYLVDVVHQHVVLMTNFFQRVEYL 373
           L+SL  +YLV    QH++     FQRV +L
Sbjct: 303 LVSLFILYLVRYTCQHLIKRYTKFQRVFFL 332


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 203  DQLLSTFIANNYL--CYFYLVADHDHARDHVLLTADLVRDL 319
            D+LLS  I   +   C+  ++ +  H+R ++ L+ DLV DL
Sbjct: 1400 DRLLSLQILLQFFESCWTGVLLNKFHSRQYLFLSRDLVEDL 1440


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -2

Query: 181 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 74
           Q+ +G  + +H ++DR++     ++ H +    DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 558 LNTLLSEITDSLPDLTLMLDKLAEQLLEAIN 650
           L+T + E  DS  + +L L+   EQ+++A+N
Sbjct: 108 LHTTILEEGDSYQESSLSLEAAVEQIVQAVN 138


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 685 LFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITSLAV 530
           LFN   C C +      + + +LS++S K  NE     +++++ V   ++ V
Sbjct: 469 LFNICDCPCVVFPFTKVDANIDLSDVSYKPLNEEDKENNDMYDPVLFDNMPV 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,651
Number of Sequences: 5004
Number of extensions: 47399
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)