Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120693.seq
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    31   1.2  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    30   1.5  
11_06_0507 + 24402239-24402297,24402686-24402753,24403704-244037...    29   3.6  
08_01_0205 - 1642769-1642783,1642923-1643555,1643656-1643737,164...    29   3.6  
06_03_0235 + 18561267-18561442,18561564-18561752,18562176-185624...    29   3.6  
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671     28   8.3  
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822...    28   8.3  

>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 119 GSCHNTVKYMVDIYGASVLILRTP 190
           G CHN VK +  IYG + L+L  P
Sbjct: 546 GDCHNAVKLLSKIYGRNPLLLLAP 569


>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 655  IVLMASNNCSANLSNMSVKSGNESVISESNVFN 557
            +V + SN CS    NMS+KS  E + ++SN F+
Sbjct: 944  VVCLGSNTCSNKTKNMSIKS--EHIYNKSNQFD 974


>11_06_0507 +
           24402239-24402297,24402686-24402753,24403704-24403785,
           24403894-24403945,24405368-24405413,24405568-24405626,
           24405736-24405803,24406009-24406119,24406236-24406312,
           24406478-24406554
          Length = 232

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = -2

Query: 310 NEVCREENVISSV------IVIGDEVK-VAQIIVCNKCAQQLVGKRARRSQNQNGRSVN 155
           N +C E+N + S       I  G++ + + +++ C +CA++L  KR +  + +  + ++
Sbjct: 109 NRICDEKNGLGSYEVNFSYIEAGEQKQALVKLVACQRCAEKLAYKRQKEKEREKEKEIS 167


>08_01_0205 -
           1642769-1642783,1642923-1643555,1643656-1643737,
           1644474-1644514
          Length = 256

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 232 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 74
           +C+  A QL GK+   S  ++  SV + + F ++ TR    +D   M + +GE
Sbjct: 196 ICSGIAAQLFGKKNELSNQESVASVTIPYSFPKLWTRVE--IDDAMMCKINGE 246


>06_03_0235 +
           18561267-18561442,18561564-18561752,18562176-18562449,
           18562550-18562639
          Length = 242

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 137 VKYMVDIYGASVLILRTPCSFADQLLSTFIANNYLCYFYLVADHDHA 277
           +KY +D YG  + I   P S +  L+     NNY     LV+DH  A
Sbjct: 102 MKYRLDNYGKRIFI---PTSISVTLVDIMDTNNYTLLGTLVSDHHGA 145


>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
          Length = 340

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 333 IAVTFIVSQARTATNIRRAGKNSSSKRHVDEQRQPNKSQ 449
           + VT  VS       +RRAGK++       +Q+QPN  Q
Sbjct: 50  VTVTGKVSADTLVRKLRRAGKHAEQWPEEQQQQQPNGGQ 88


>03_06_0501 -
           34380155-34380637,34380961-34381029,34382206-34382229,
           34382622-34382786
          Length = 246

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 27/86 (31%), Positives = 42/86 (48%)
 Frame = +3

Query: 438 NKSQPN*SIFRIVQRDDGRAQSKRQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLD 617
           NKS  N    R V  +DG+A ++++ L+ LET+    L  LN +       L D+  ++ 
Sbjct: 156 NKSDLN--HLRSVPEEDGQALAEKEGLSFLETS---ALEALN-VEKAFQTILKDIHQIIS 209

Query: 618 KLAEQLLEAINTMQQTQRNELNNTNS 695
           K A    EA  +   TQ   +N T+S
Sbjct: 210 KKALAAQEAAGSGPPTQGTTINVTDS 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,836,285
Number of Sequences: 37544
Number of extensions: 314462
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)