Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120693.seq
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_55634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)                   29   4.8  
SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_17804| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 243 ATFTSSPITITLEITFSSRQTSFAIS 320
           ATFT+SP+T +  +++S+++T  A+S
Sbjct: 289 ATFTTSPLTTSATMSYSTKETFSALS 314


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +3

Query: 474  VQRD-DGRAQSKRQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLA--EQLLEA 644
            V+R+ + +     +LL       DV  TRL  +LSE +DS   +  + + ++  EQ L  
Sbjct: 946  VRREFESKINLTEKLLKETTEKLDVAETRLEKVLSENSDSQSKIQRLQETVSHVEQRLTD 1005

Query: 645  INTMQQTQRNELNN 686
             NT  Q   +ELN+
Sbjct: 1006 SNTSDQNLISELNS 1019


>SB_55634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 498 QSKRQLLAALETAKDVIL-TRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRN 674
           +SKR+LL+ +ET+K +   + L+ +L ++T  +    ++L +L E L E     +     
Sbjct: 42  RSKRRLLSVIETSKSLSHDSNLDIVLHDLTTEVHQYGMILQQLLE-LHEQNTNGEHGHEV 100

Query: 675 ELNNTNSIL 701
           +L   N IL
Sbjct: 101 QLTEENEIL 109


>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
          Length = 607

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 498 QSKRQLLAALETAKDVIL-TRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRN 674
           +SKR+LL+ +ET+K +   + L+ +L ++T  +    ++L +L E L E     +     
Sbjct: 354 RSKRRLLSVIETSKSLSHDSNLDIVLHDLTTEVHQYGMILQQLLE-LHEQNTNGEHGHEV 412

Query: 675 ELNNTNSIL 701
           +L   N IL
Sbjct: 413 QLTEENEIL 421


>SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 498 QSKRQLLAALETAKDVIL-TRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRN 674
           +SKR+LL+ +ET+K +   + L+ +L ++T  +    ++L +L E L E     +     
Sbjct: 42  RSKRRLLSVIETSKSLSHDSNLDIVLHDLTTEVHQYGMILQQLLE-LHEQNTNGEHGHEV 100

Query: 675 ELNNTNSIL 701
           +L   N IL
Sbjct: 101 QLTEENEIL 109


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 218 CSATGRQTSKAFAKSKRTLRKCPPCI*PCYDTIRPHR 108
           C  T R         + TLR C   + PC  T+RPHR
Sbjct: 240 CRYTLRPCRYTLRPCRYTLRPCGYTLRPCGYTLRPHR 276


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -2

Query: 679 NSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVK-ITSLAVSNAARSCRF 503
           N ++CVC +  +A +NC A  + +     N  VI+  +  +L   +T+L+ ++A  +   
Sbjct: 533 NEIKCVCIVSKLARSNCFAVHTPVRTFERNPLVIAMGSEKDLNDWVTTLSTASARANSSE 592

Query: 502 DCARPSSRWTI 470
             A   + W I
Sbjct: 593 GPAPYKALWAI 603


>SB_17804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
 Frame = +3

Query: 498 QSKRQLLAALETAKDVIL-TRLNTLLSEITDSLPDLTLMLDKLAEQLLEAIN-----TMQ 659
           +SKR+LL+ +ET+K +   + L+ +L ++T  +    ++L +L E   +  N      +Q
Sbjct: 42  RSKRRLLSVIETSKSLSHDSNLDIVLHDLTTEVQQYGMILQQLLELHEQNTNGERGHEVQ 101

Query: 660 QTQRNEL 680
            T+ NE+
Sbjct: 102 LTEENEI 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,730,907
Number of Sequences: 59808
Number of extensions: 366719
Number of successful extensions: 1051
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)