Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120693.seq
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81059-1|CAB02925.1|  249|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical...    27   9.8  

>AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical
           protein F49D11.10 protein.
          Length = 766

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -2

Query: 319 EIANEVCREENVISSVIVIGDEVKVAQIIVCNKCAQQLVGKRARRSQNQNGRSVNVHHVF 140
           EI + + +E+ VIS  IV   +      I+ N     +V +    S+N  G  ++V H F
Sbjct: 154 EIPSNIRKEQIVISDRIVSYCQGLEITSIILNDSDFSIVKETKYTSKNTGGHDIDVIHQF 213

Query: 139 DRVMTRSARIV 107
           DR+      +V
Sbjct: 214 DRLSANGNYLV 224


>Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical
           protein T10B10.3 protein.
          Length = 741

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 492 RAQSKRQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQR 671
           RAQ++++ L   E ++D +   + T +  I     D  ++LD+L       +NT     +
Sbjct: 187 RAQARQRKLTEKEASQDTVPNVIPTEIPSILSQAIDQDVLLDELVRTRHNRLNTELFDAQ 246

Query: 672 NELNNTNS 695
           +E NN ++
Sbjct: 247 HEENNEDN 254


>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 11  IDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLIL-RT 187
           ID   I+Q+  + L  F  ++ T+  K  KM+N  G   +  V  ++ +Y  S   L R 
Sbjct: 183 IDKKIIFQHTILKLTYFCGVMRTVNEKRSKMMNPGGQEIYPDV--ILQLYEKSKSTLHRI 240

Query: 188 PCSFADQLLSTFIANNYLCYFYLV 259
            C   D+LL   + +   C   L+
Sbjct: 241 CCQPLDKLLEWEVTDEEYCLMNLL 264


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 400 EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 308
           E+  AR IFVAV+A   MN+TA+ T  ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214


>Z81059-1|CAB02925.1|  249|Caenorhabditis elegans Hypothetical
           protein F11F1.2 protein.
          Length = 249

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
 Frame = +3

Query: 462 IFRIVQRDDGRAQSK-RQLLAALET-AKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQL 635
           I  +V++  G A  K +++L+ ++    + +L++LN L+  + D L +L   +  L EQL
Sbjct: 114 IIDLVEKIPGSALPKVQEILSNVDNLGVEEVLSKLNGLVPGLGDELENLITTVLNLIEQL 173

Query: 636 LEAINTMQQTQRNELNNTNSIL 701
           L+ +  + Q+  + L   + I+
Sbjct: 174 LKEVADILQSLPDVLGELSKIV 195


>U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical
           protein F25F8.1 protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = -2

Query: 232 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKRL 53
           V   C Q L G+ +RRS+  + + V V  +  ++       +  +   R + +++L+ RL
Sbjct: 67  VLRSCVQSLEGRCSRRSEVAHQQKVAVKQLVAKIEVILLNELSGYVERRNEPDRRLISRL 126

Query: 52  QRHF*ILINVIRVDPR 5
            R    LIN+   D R
Sbjct: 127 NRE---LINIDSKDDR 139


>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical
           protein D2021.1 protein.
          Length = 1168

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 545 NIFSGFQRREELPF*LRTPVITLDNSK 465
           ++ +  +R E+ P  L+TP++T+DN K
Sbjct: 691 DVRTALERSEKHPLILKTPILTVDNRK 717


>AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical
           protein Y67A10A.2 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 179 LRTPCSFADQLLSTFI--ANNYLCYFYLVADHD 271
           +RTP + A Q LSTFI  A N+   FY  +  D
Sbjct: 168 IRTPLNQASQCLSTFIIEATNFRYNFYTASGSD 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,634
Number of Sequences: 27780
Number of extensions: 282071
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)