Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120693.seq
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77800.1 68414.m09059 PHD finger family protein contains Pfam...    32   0.32 
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr...    31   0.56 
At4g18240.1 68417.m02709 starch synthase-related protein contain...    29   2.3  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   3.0  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    29   3.9  
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At3g12020.1 68416.m01490 kinesin motor protein-related similar t...    27   9.1  

>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1423

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 307  EVCREENVISSVIVIGDEVKVAQIIVCNKCAQQLVG 200
            ++CR    I ++IV+    KVA  I C KCA++  G
Sbjct: 1005 DICRRSETIWNLIVVCSSCKVAVHIDCYKCAKESTG 1040


>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
           protein (bHLH125) contains Pfam profile: PF00010
           helix-loop-helix DNA-binding domain;  supporting cDNA
           gi|20805889|gb|AF506369.1|
          Length = 259

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -2

Query: 352 TMNVTAI*TGTEIANEVC--REENVISSVIVIGDEVKVAQIIVCNKCAQQLVGKRARRSQ 179
           T+ VT    G EI    C  R ++ +SSV+ +  + +   ++ C    +Q        SQ
Sbjct: 181 TVVVTPCLVGVEIIISCCLGRNKSCLSSVLQMLAQEQRFSVVSCLSARRQQRFMHTIVSQ 240

Query: 178 NQNGRSVNVHHVFDRVMT 125
            ++G+ +N+  + D++MT
Sbjct: 241 VEDGKQINILELKDKIMT 258


>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
 Frame = +3

Query: 489 GRAQSKRQLLAALETAKDVILTRLNTLLSEITD---SLPDLTLMLDKLAEQLLEAINTMQ 659
           G   S + L + L  +++ + ++L+TL  E TD    +  L L+LD+  +Q  +A+  +Q
Sbjct: 322 GLESSVKDLESKLSVSQEDV-SQLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQ 380

Query: 660 QTQ--RNELNNTNSIL 701
           Q Q  RN+++     L
Sbjct: 381 QNQDLRNKVDKIEESL 396


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 68   LLFTIPSKHRKMINDAG--GSCHNTVKYMVDIYGASVLI 178
            LL T PS   ++I +    G CHN +KY+  +Y   +++
Sbjct: 932  LLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 510  QLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQ 662
            Q ++ L+  +D++L R N++ S++   L ++ L    LAE LLE    + Q
Sbjct: 1727 QKISGLQYQEDLMLQRSNSMGSQLDILLKEIDLSNGDLAETLLEQERHLNQ 1777


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 125 CHNTVKYMVDIYGASVLILRTPC 193
           CH+T KY+   YG  +L+  T C
Sbjct: 857 CHDTAKYVSKRYGCDILLEDTRC 879


>At3g12020.1 68416.m01490 kinesin motor protein-related similar to
           putative kinesin heavy chain GB:AAD23684 GI:4567271 from
           [Arabidopsis thaliana]
          Length = 1030

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 495 AQSKRQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQ 632
           A  K+QL  ALE A+   +  L     E+++S   L L   KLAE+
Sbjct: 825 ANLKQQLSEALELAQGTKIKELKQDAKELSESKEQLELRNRKLAEE 870


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,271
Number of Sequences: 28952
Number of extensions: 252036
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)