Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120691.seq
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.8  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   4.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   4.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.2  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    21   7.4  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    21   7.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.8  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +1

Query: 10  PDQRKR-GKAV*IGGDHDTPPDSVAKRVGTRQRGPSPC 120
           PD R   G    +GGD  + P + A R G      +PC
Sbjct: 146 PDSRVGYGSVGLVGGDPASSPGAAAGRTGNSLSWNNPC 183


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 129 NRSAGTRAALPCPNSFCNRIRWRIMVSSDSNRFT 28
           N  +G  AAL    S CN +  RI V +  N  T
Sbjct: 86  NTRSGDEAALADMISRCNAVGVRIYVDTVINHMT 119


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 129 NRSAGTRAALPCPNSFCNRIRWRIMVSSDSNRFT 28
           N  +G  AAL    S CN +  RI V +  N  T
Sbjct: 87  NTRSGDEAALADMISRCNAVGVRIYVDTVINHMT 120


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 163 RCRRTR-KNFTTVALICWVKTLWPRRPNNSA 252
           RC+    K+F T+   C   + WP RP   A
Sbjct: 15  RCKLLSCKDFDTLYRDCTTASSWPGRPPKRA 45


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 393 STALCMFGGRVACLSNRVM*LLAS 322
           +  LC+FGG+V   S + M +L S
Sbjct: 333 TVCLCLFGGKVNDESTQPMLVLNS 356


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 393 STALCMFGGRVACLSNRVM*LLAS 322
           +  LC+FGG+V   S + M +L S
Sbjct: 333 TVCLCLFGGKVNDESTQPMLVLNS 356


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 423 IMLMCGKRRDSTALCMFGGRVACLSNRV 340
           I +   +++  TAL   G  V+C+S  V
Sbjct: 90  IKIQISQQQSVTALLDTGSEVSCISEEV 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,457
Number of Sequences: 336
Number of extensions: 3188
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)