Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120691.seq
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.1
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 27 2.0
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 27 2.0
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 27 2.0
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 3.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 4.6
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 26 6.0
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 6.0
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 8.0
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 530 ENVAFLAPLSASANIFNYMAELATRAGKQPSMFQNATFLTSAANAVN 670
E ++FL ++ +A MA +A + S+FQN+ +L + +N
Sbjct: 708 EKLSFLYLITGNAEKLQKMAIIAEKRNDTLSLFQNSLYLNEVESRIN 754
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 217 KTLWPRRPNNSACRPV-HGGGIGDVQH-SHSVTV--QSAAGQQL 336
+ WPR A PV H G G+ QH HS TV QSA GQ++
Sbjct: 192 RNCWPRT-RGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 217 KTLWPRRPNNSACRPV-HGGGIGDVQH-SHSVTV--QSAAGQQL 336
+ WPR A PV H G G+ QH HS TV QSA GQ++
Sbjct: 192 RNCWPRT-RGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 217 KTLWPRRPNNSACRPV-HGGGIGDVQH-SHSVTV--QSAAGQQL 336
+ WPR A PV H G G+ QH HS TV QSA GQ++
Sbjct: 192 RNCWPRT-RGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 577 QLHGRAGDASRQATQHVPKRYLPNVGRQRGQF 672
+ H R+ DAS +A + + + P++ R+R +F
Sbjct: 510 RFHSRSVDASPKAVRRESRSFFPSLTRKRSKF 541
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +1
Query: 265 HGGGIGDVQHSHSVTVQSAAGQQLHD--SVAQARHSAAKH 378
H I D + +VT+ S++GQ H S H+ H
Sbjct: 3688 HSSSISDTKSPATVTISSSSGQFTHSTFSTGSTMHNTVSH 3727
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -1
Query: 472 PPPCKQIVNHGVDQIVDHVDVRKATRLDCALYVWRQSGVL 353
PPP ++ H + +V+H+ A+ C L V ++ +
Sbjct: 468 PPPVLVLLRHLAENLVNHISSIYASHSSCLLQVKSETAAI 507
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 466 PCKQIVNHGVDQIVDHVDVRKATRLDCALYVWRQSG 359
P ++N +++DH++ +D L WRQSG
Sbjct: 226 PSTVMLNLQPFRVIDHIEFASPGIVDSFLNKWRQSG 261
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 186 FYNGGADMLGKDALAEAAKQLSL 254
FY ++ GK LAEAAKQ+ +
Sbjct: 49 FYIPSFNLFGKGCLAEAAKQIKM 71
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 244 NSACRPVHGGGIGDVQHSHSVTVQSAAGQQLH 339
+S C HG G+ H + GQ+LH
Sbjct: 237 SSTCSSCHGSGLQPGSHKSTCFACKGTGQRLH 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,150
Number of Sequences: 5004
Number of extensions: 52126
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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