Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120691.seq
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099     29   2.7  
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879...    28   8.3  
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357...    28   8.3  
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863...    28   8.3  
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754...    28   8.3  
03_06_0756 - 36032432-36033871                                         28   8.3  

>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
          Length = 575

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 680 RRAN*PRWRPTLGR*RFGTCWVACRLAS 597
           RR+  PRWR  L R  F   WVA  LA+
Sbjct: 523 RRSRWPRWRAALVRNYFSNPWVATSLAA 550


>12_01_0904 +
           8791474-8792261,8792935-8793037,8794009-8794055,
           8795180-8795717
          Length = 491

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 425 NDLINAVIDDLFAXXXXXXXXXVERKKQARIMSLKENVAFLAPLSASANIFNYMAELATR 604
           N LI+A   D  +         +  KKQ  I  ++     L  +S  ANI +Y+A  A  
Sbjct: 277 NHLIDAFSVDGGSMSCTVVILIIGEKKQHTIFKMEIRCVLLG-VSCGANIADYVARKAVE 335

Query: 605 AGK 613
           AGK
Sbjct: 336 AGK 338


>10_01_0326 +
           3574129-3574329,3575144-3575692,3575914-3576072,
           3576349-3577543,3577626-3577762,3578052-3578242,
           3578888-3579218
          Length = 920

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 241 NNSACRPVHGGGIGDVQHSHSVTVQSAAGQQLHDSVAQARHSAAKHTERSR 393
           ++++ RP  G   G  Q S++  VQ     Q+H  VAQ  H    + ++ +
Sbjct: 401 SSASPRPYAGQSSGCQQISNATVVQECMTPQMHPIVAQQHHKQMPNEQQQQ 451


>07_03_1544 -
           27585581-27585757,27585986-27586091,27586246-27586338,
           27587840-27587958,27588486-27588746,27589226-27589515,
           27589624-27590152
          Length = 524

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 259 PVHGGGIGDVQHSHSVTVQSAAGQQLHDSVAQARHSAA 372
           P    G+G  Q++  VTV +AAG+ L   +A+A   AA
Sbjct: 90  PGQPAGVGFAQYAGYVTVDAAAGRALFYYLAEADGGAA 127


>05_07_0055 -
           27374028-27374080,27374205-27374295,27374930-27375448,
           27375544-27375779,27376363-27376846,27376993-27378282
          Length = 890

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -3

Query: 335 NCWPAAD*TVTEWECC----TSPIPPPCTGRQAELFGRLGQSV 219
           N W A D  + EW+C       P PPP   R+  L   +  SV
Sbjct: 45  NPWEAGDPELEEWQCARPKTRHPTPPPPPPRRCHLLFTMKLSV 87


>03_06_0756 - 36032432-36033871
          Length = 479

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 291 TFPFRYRSISSWPTIT*LCCSSTPLCRQTYRAQSSRV 401
           T  F + +++ +  +T LC +  P+C Q + A + ++
Sbjct: 63  TLGFSFANVTGFAVLTGLCAAMDPICGQAHGASNGKL 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,656,622
Number of Sequences: 37544
Number of extensions: 415012
Number of successful extensions: 1345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)