Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120691.seq
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)            30   1.6  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  28   6.4  
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)
          Length = 373

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 317 QQLANNYMTLLLKHATLPPNIQSAVESRRF 406
           Q   + YMTLL+KHA L PNI +   +RR+
Sbjct: 157 QNTRHYYMTLLVKHAALLPNI-ACQNTRRY 185


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +2

Query: 311 FNQQLANNYMTLLLKH--ATLPPNIQSAVESRR-FPHINMINDLINAVIDDLFA 463
           +N++L +  M+LLLK   +  P  +  A E  R F H NM+++ I+++ +DL +
Sbjct: 659 YNKRLDDQQMSLLLKKEGSANPLWLTLACEELRVFGHFNMMDEKISSLKNDLIS 712


>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -2

Query: 330 LASC*LNGNGM-GMLHVTDSATMYWTAS*VVWPPRPKRLYPTYQRHRCKIFARTPAANLA 154
           L SC   G G    +H  D+  +  T +    PPRP   +P Y             ++  
Sbjct: 90  LDSCYFPGWGRHNCIHSEDAGVVCQTRNTTAIPPRPTTWWPPYTTPSYNPVRLVNGSSFN 149

Query: 153 QTMPEIYSNRSAGT 112
           +   EIY N + GT
Sbjct: 150 EGRVEIYHNGTWGT 163



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -2

Query: 330 LASC*LNGNGM-GMLHVTDSATMYWTAS*VVWPPRPKRLYPTYQRHRCKIFARTPAANLA 154
           L SC   G G    +H  D+  +  T +    PPRP   +P Y             ++  
Sbjct: 216 LDSCYFPGWGRHNCIHSEDAGVVCQTRNTTAIPPRPTTWWPPYTTPSYNPVRLVNGSSFN 275

Query: 153 QTMPEIYSNRSAGT 112
           +   EIY N + GT
Sbjct: 276 EGRVEIYHNGTWGT 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,421,913
Number of Sequences: 59808
Number of extensions: 440766
Number of successful extensions: 1138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)