Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120691.seq
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    30   1.9  
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
           protein Y67D8C.9 protein.
          Length = 1073

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = -1

Query: 457 QIVNHGVDQIVDHVDVRKATRLDCALYVWRQSGVLEQQSHVI 332
           +++  G+D +   +DV KAT+L+ A+ V+ +  V+ Q  H++
Sbjct: 802 EVMLFGIDAVYKFIDVYKATQLNKAILVYFEP-VISQMDHLL 842


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 117 LPSDSNIFQASFVLNSLPAYAQK 185
           LP DSNIF AS+V  +L  Y Q+
Sbjct: 235 LPGDSNIFLASYVSGNLYVYDQR 257


>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +2

Query: 305 LPFNQQLANNYMTLLLKHATLPPNIQSAVES-RRFPHINMINDLINAVIDDLFAXXXXXX 481
           L  NQ L+  Y    L+H    PN +  + S R+F    MI+D+    +D +F       
Sbjct: 258 LVLNQLLSKKYK---LQHFLESPNAREFLISYRKFDEQPMISDIYEMGLDTIFGKPVNVE 314

Query: 482 XXXVERKKQARIMSLKENVAFLAPLSASAN 571
               ++  + R+M  + +++    L  S N
Sbjct: 315 YKEEDKIYKFRVMDTEHDISIQLFLRRSGN 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,504,244
Number of Sequences: 27780
Number of extensions: 312640
Number of successful extensions: 784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)